Locus 9385

Sequence ID 3R_DroMel_CAF1
Location 24,909,412 – 24,909,510
Length 98
Max. P 0.989332
window15026

overview

Window 6

Location 24,909,412 – 24,909,510
Length 98
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 91.71
Mean single sequence MFE -31.66
Consensus MFE -29.69
Energy contribution -29.17
Covariance contribution -0.52
Combinations/Pair 1.15
Mean z-score -1.69
Structure conservation index 0.94
SVM decision value 2.16
SVM RNA-class probability 0.989332
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24909412 98 - 27905053
CGAUUUGGCACCACGGCCCCAUUAUCUGGCAGGUCUCCAGAUUGACAUGACGUGUGUGCGUAUUCAUAUUUCGUGAAUAGCGCCCAGAUCAGUUGUGA
((((((((.(((...(((.........))).)))..)))))))).((..((((.((.((((((((((.....)))))).)))).)).))..))..)). ( -30.80)
>DroSec_CAF1 21026 98 - 1
CGAUUUGGCCCCACGUUCCCAUUAUCUGGCCAGUUUCCAGAUUGACAUGACGUGUGUGCGUAUUCAUACUUCGUGAGUAGCGCCCAGAUCAGUUGUGA
.(((((((...((((((......((((((.......))))))......)))))).((((.(((((((.....))))))))))))))))))........ ( -32.50)
>DroSim_CAF1 20670 98 - 1
CGAUUUGGCCCCACGUCCCCAUUAUCUGGCCGGUCUCCAGAUUGACAUGACGUGUGUGCGUAUUCAUAUUUCGUGAGUAGCGCCCAGAUCAGUUGUGA
.(((((((...((((((......((((((.......))))))......)))))).((((.(((((((.....))))))))))))))))))........ ( -34.30)
>DroEre_CAF1 21115 95 - 1
CGAUUUGGCCCCACGG---CAUUAUCUGGCAGGUCUCCAGAUUGACAUGACGUGUGUGCGCACUCAUAUUUCGUGAGUAGCGUCCAGAUCAUUUGUGA
.(((((((...((((.---(((.((((((.......))))))....))).))))...((((((((((.....)))))).)))))))))))........ ( -32.00)
>DroYak_CAF1 21389 94 - 1
CGAU-UGGCCCCACGG---CAUUAUCUGGCAGGUCUCCAGAUUGACAUGACGUGUGUGCGUACUCAUAUUUCGUGAGUAGCGCCCAGAUCAAAUGUGA
.(((-(((...((((.---(((.((((((.......))))))....))).)))).((((.(((((((.....)))))))))))))).)))........ ( -28.70)
>consensus
CGAUUUGGCCCCACGG_CCCAUUAUCUGGCAGGUCUCCAGAUUGACAUGACGUGUGUGCGUAUUCAUAUUUCGUGAGUAGCGCCCAGAUCAGUUGUGA
.(((((((...((((........((((((.......))))))........))))...((((((((((.....)))))).)))))))))))........ (-29.69 = -29.17 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:33:19 2006