Locus 9382

Sequence ID 3R_DroMel_CAF1
Location 24,904,456 – 24,904,552
Length 96
Max. P 0.802223
window15018

overview

Window 8

Location 24,904,456 – 24,904,552
Length 96
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 73.67
Mean single sequence MFE -20.87
Consensus MFE -13.96
Energy contribution -14.16
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.49
Structure conservation index 0.67
SVM decision value 0.62
SVM RNA-class probability 0.802223
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24904456 96 + 27905053
---------------------CAAUUAUUCCAUCUCUUGAAGUCCUGACAGCAGGAUCUCUUAAAGGAAAAGCUCAACAC---UCCUUAGGAUGCCAAACUCUGUGCAACUAACUCUCUG
---------------------.......(((.......((..(((((....)))))..))...(((((............---))))).)))(((((.....)).)))............ ( -17.90)
>DroSec_CAF1 17475 84 + 1
---------------------CAUUUAGUCCAUCUCUUGAAGUCCUGACAGCAGGAUCUCUUAAAGGAAAUGCUCAACAC---UCCUUAGGAUGCCAAAC----------AAA--CUCUG
---------------------......((((.......((..(((((....)))))..))...(((((............---))))).)))).......----------...--..... ( -16.90)
>DroSim_CAF1 16766 87 + 1
---------------------CAUUUAGUCCAUCUCUUGAAGUCCUGACAGCAGGAUCUCUUAAAGGAAAUGCUCAACACUACUCCUUAGGAUGCCAAAC----------AAA--CUCUG
---------------------......((((.......((..(((((....)))))..))...(((((...............))))).)))).......----------...--..... ( -16.66)
>DroEre_CAF1 17512 82 + 1
-------------------UACGUUUGUGCCUUCUCUUGAAGUCCUGGCAGCAGGAUCUCUUAAAGGAACAGCAUAACGC---UCCUUAGGAUGCCGAAC----------------UCUG
-------------------...(((((.((.((((...((..(((((....)))))..))...(((((...((.....))---))))))))).)))))))----------------.... ( -23.10)
>DroYak_CAF1 17730 113 + 1
CAUUUAAAAUGAGUCCCAUUACGGUUAUUCCUUCUCUUGAAGUCCUGGCAGCAGGAUCUCUUAAAGGAACAGCAUAACAC---UCCUUAGGAUGCUGAACUUUGUGCA--ACU--CUCUG
..........((((..(((...((((.((((((.....((..(((((....)))))..))...))))))((((((....(---(....)).))))))))))..)))..--)))--).... ( -29.80)
>consensus
_____________________CAUUUAUUCCAUCUCUUGAAGUCCUGACAGCAGGAUCUCUUAAAGGAAAAGCUCAACAC___UCCUUAGGAUGCCAAAC__________AAA__CUCUG
............................(((.......((..(((((....)))))..))...(((((...(.......)...))))).)))............................ (-13.96 = -14.16 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:33:13 2006