Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 24,902,472 – 24,902,567 |
Length | 95 |
Max. P | 0.989558 |
Location | 24,902,472 – 24,902,567 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 94.74 |
Mean single sequence MFE | -13.02 |
Consensus MFE | -12.59 |
Energy contribution | -12.59 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.17 |
Structure conservation index | 0.97 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.799697 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24902472 95 + 27905053 UUAUUCGUUUCCCAUUUGCUGUUUUUCUUAUUUUCUGCUGACUGUUAAUAGGCCAACUACAACAUUUUUCGCGGCUGUCAGCAUUUCUCACUUCU ...................................(((((((........((((..................)))))))))))............ ( -12.47) >DroSec_CAF1 15515 95 + 1 UUGUUCGUUUCCCAUUUGCUGUUUUUCUUAUUUUCUGCUGACUGUUAAUAGGCCAACUACAACAUUUUUCGCGGCUGUCAGCAUUUCUCACUUCU ...................................(((((((........((((..................)))))))))))............ ( -12.47) >DroSim_CAF1 14853 95 + 1 UUGAUCGUUUCCCAUUUGCUGUUUUUCUUAUUUUCUGCUGACUGUUAAUAGGCCAACUACAACAUUUUUCGCGGCUGUCAGCAUUUCUCACUUCU ...................................(((((((........((((..................)))))))))))............ ( -12.47) >DroEre_CAF1 15571 95 + 1 UUUUUCGCUUCCCAUUUGCUGUUUUUCUCAUAUUCUGCUGACUUUUAAUAGGCCAACUACAACAUUUUUCGUGGCUGUCAGCAUUUCUCACUUCU ......((.........))................(((((((........(((((................))))))))))))............ ( -13.99) >DroYak_CAF1 15727 95 + 1 UUUUUUGCUUCCCAUUUGCUGUAUUUCUCAUAUUCUGCUGACUUUUAAUAGGCCAACUACAACAUUUUUCGUGGCUGUCAGCAUUUCUCACUUCU ......((.........))................(((((((........(((((................))))))))))))............ ( -13.69) >consensus UUGUUCGUUUCCCAUUUGCUGUUUUUCUUAUUUUCUGCUGACUGUUAAUAGGCCAACUACAACAUUUUUCGCGGCUGUCAGCAUUUCUCACUUCU ...................................(((((((........((((..................)))))))))))............ (-12.59 = -12.59 + -0.00)
Location | 24,902,472 – 24,902,567 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 94.74 |
Mean single sequence MFE | -16.40 |
Consensus MFE | -15.80 |
Energy contribution | -15.80 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.58 |
Structure conservation index | 0.96 |
SVM decision value | 2.17 |
SVM RNA-class probability | 0.989558 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24902472 95 - 27905053 AGAAGUGAGAAAUGCUGACAGCCGCGAAAAAUGUUGUAGUUGGCCUAUUAACAGUCAGCAGAAAAUAAGAAAAACAGCAAAUGGGAAACGAAUAA ............((((((((((..........))))).((((((.........))))))...............)))))....(....)...... ( -16.80) >DroSec_CAF1 15515 95 - 1 AGAAGUGAGAAAUGCUGACAGCCGCGAAAAAUGUUGUAGUUGGCCUAUUAACAGUCAGCAGAAAAUAAGAAAAACAGCAAAUGGGAAACGAACAA ............((((((((((..........))))).((((((.........))))))...............)))))....(....)...... ( -16.80) >DroSim_CAF1 14853 95 - 1 AGAAGUGAGAAAUGCUGACAGCCGCGAAAAAUGUUGUAGUUGGCCUAUUAACAGUCAGCAGAAAAUAAGAAAAACAGCAAAUGGGAAACGAUCAA .....(((....((((((((((..........))))).((((((.........))))))...............)))))....(....)..))). ( -17.80) >DroEre_CAF1 15571 95 - 1 AGAAGUGAGAAAUGCUGACAGCCACGAAAAAUGUUGUAGUUGGCCUAUUAAAAGUCAGCAGAAUAUGAGAAAAACAGCAAAUGGGAAGCGAAAAA ............((((((((((..........))))).((((((.........))))))...............)))))................ ( -15.30) >DroYak_CAF1 15727 95 - 1 AGAAGUGAGAAAUGCUGACAGCCACGAAAAAUGUUGUAGUUGGCCUAUUAAAAGUCAGCAGAAUAUGAGAAAUACAGCAAAUGGGAAGCAAAAAA ............((((((((((..........))))).((((((.........))))))...............)))))................ ( -15.30) >consensus AGAAGUGAGAAAUGCUGACAGCCGCGAAAAAUGUUGUAGUUGGCCUAUUAACAGUCAGCAGAAAAUAAGAAAAACAGCAAAUGGGAAACGAAAAA ............((((((((((..........))))).((((((.........))))))...............)))))....(....)...... (-15.80 = -15.80 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:33:07 2006