| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,900,953 – 24,901,067 |
| Length | 114 |
| Max. P | 0.931973 |
| Location | 24,900,953 – 24,901,067 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 75.55 |
| Mean single sequence MFE | -30.72 |
| Consensus MFE | -17.82 |
| Energy contribution | -21.75 |
| Covariance contribution | 3.93 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.58 |
| SVM decision value | 1.22 |
| SVM RNA-class probability | 0.931973 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24900953 114 + 27905053 -GAGAGUAUCCUUGGCCGAAAGUCCUUGAUGCCUGCUUAUUUAUUUAUAAAGCAAUUUUUAAAGGACGAGGCGGCCGCAUAAAGUGGCAUCAUAA----AAACAUGGCCAAGACGUCUG -.(((((...((((((((...((((((......(((((((......)).))))).......))))))((....(((((.....))))).))....----.....)))))))))).))). ( -35.22) >DroVir_CAF1 19931 93 + 1 -UGGAUUAGCC---------------------CUCUUUAUUUAUUUAUAACGCAUUUUU-AAAUG-CCACACAAACGCAUAGA--CACACCAUAAACUGAGAGUUGACUAAGACAACAA -((..(((((.---------------------(((((..(((((.......(((((...-.))))-)........(.....).--......)))))..)))))..).))))..)).... ( -12.40) >DroSec_CAF1 13972 95 + 1 -GAGAGUAUCCUUGGCCGAAAGUCCUUGAUGCCUGCUUAUUU-------------------AGGGACGAGGCGGCCGCAUAAAGUGGCAUCAUAA----AAACAUGGCCAAGACGUCUG -.(((((...((((((((...((((((((...........))-------------------))))))((....(((((.....))))).))....----.....)))))))))).))). ( -32.80) >DroSim_CAF1 13306 114 + 1 -GAGAGUAUCCUUGGCCGAAAGUCCUUGAUGCCUGCUUAUUUAUUUAUGAAGCAAUUUUUAAGGGACGAGGCGGCCGCAUAAAGUGGCAUCAUAA----AAACAUGGCCAAGACGUCUG -.(((((...((((((((...((((((......(((((((......))).)))).......))))))((....(((((.....))))).))....----.....)))))))))).))). ( -35.02) >DroEre_CAF1 14046 114 + 1 -GCGAGUAUCCUUGUCCGAAAGUCCUUGAUGCCUGCUUAUUUAUUUAUAAAGCAAUUUUUAAGGGACGAGGCGGCCGCAUAAAGUGGCAUCAUAA----AAACAUGGCCAAGACGGCAG -..((....((((((((....).((((((....(((((((......)).)))))....)))))))))))))..(((((.....))))).))....----.......(((.....))).. ( -32.30) >DroYak_CAF1 14176 115 + 1 GGCGAGUAUCCUUGGCCGAAAGUCCUUGAUGCUUGCUUAUUUAUUUAUGAAGCAAUUUUUAAAGGACGAGGCAGCCGCAUAAAGUGGCAUCAUAA----AAACAUGGCCAAGACGGCAG .....((...((((((((...((((((.....((((((((......))).)))))......))))))......(((((.....))))).......----.....))))))))...)).. ( -36.60) >consensus _GAGAGUAUCCUUGGCCGAAAGUCCUUGAUGCCUGCUUAUUUAUUUAUAAAGCAAUUUUUAAAGGACGAGGCGGCCGCAUAAAGUGGCAUCAUAA____AAACAUGGCCAAGACGUCAG ..........((((((((...((((((......(((((...........))))).......))))))......(((((.....)))))................))))))))....... (-17.82 = -21.75 + 3.93)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:33:05 2006