Locus 9377

Sequence ID 3R_DroMel_CAF1
Location 24,900,303 – 24,900,420
Length 117
Max. P 0.793005
window15008

overview

Window 8

Location 24,900,303 – 24,900,420
Length 117
Sequences 4
Columns 119
Reading direction reverse
Mean pairwise identity 88.28
Mean single sequence MFE -18.88
Consensus MFE -15.95
Energy contribution -16.07
Covariance contribution 0.13
Combinations/Pair 1.08
Mean z-score -1.70
Structure conservation index 0.85
SVM decision value 0.59
SVM RNA-class probability 0.793005
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24900303 117 - 27905053
UUAUCGCAAGAUUACCCACUUGCCUAACGAUCA-UCUUCGAUUACACUGUAUAAUUUCUUCU-CCUUUUCUCCCCUGGGAAUUGUUCCCACAUUAAUGUGAAAUAAUUUAGCCCAUCAA
.....(((((........)))))....(((...-...)))......................-............(((((((((((..((((....)))).)))))))...)))).... ( -17.20)
>DroSec_CAF1 13321 117 - 1
UUAUCGCAAGAUUAUCCACUUGCCUAACGAUCA-UCGUCGAUCGCACUGUACAAUUUCUUCU-UCUUUUCUCCCCUGGGAAUUGUUCCCACAUUAAUGUGAAAUAAUUUAGCCCAUCAA
.....(((((........)))))....(((((.-.....)))))..................-............(((((((((((..((((....)))).)))))))...)))).... ( -20.40)
>DroSim_CAF1 12654 117 - 1
UUAUCGCAAGAUUAUCCACUUGCCUAACGAUCA-UCUUCGAUCGCACUGUACAAUUUCUUCU-UCUUUUCUCCCCUGGGAAUUGUUCCCACAUUAAUGUGAAAUAAUUUAGCCCAUCAA
.....(((((........)))))....(((((.-.....)))))..................-............(((((((((((..((((....)))).)))))))...)))).... ( -20.40)
>DroYak_CAF1 13498 117 - 1
UUAUCGCGAAACGAUCUACUUGCCUAUCGAUCAAUCAUUGAUCUCAGUG--CAGUUUUUUUCCCUCUUUCUCCCCUGGAAAUUGUUCCCACAUUAAUGUGAAAUAAUUUUGCCCAUCAA
.....(((((((((((............))))...(((((....)))))--..)))))...................(((((((((..((((....)))).)))))))))))....... ( -17.50)
>consensus
UUAUCGCAAGAUUAUCCACUUGCCUAACGAUCA_UCUUCGAUCGCACUGUACAAUUUCUUCU_CCUUUUCUCCCCUGGGAAUUGUUCCCACAUUAAUGUGAAAUAAUUUAGCCCAUCAA
.....(((((........))))).....((((.......))))................................(((((((((((..((((....)))).)))))))...)))).... (-15.95 = -16.07 +   0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:33:04 2006