Locus 9374

Sequence ID 3R_DroMel_CAF1
Location 24,899,599 – 24,899,719
Length 120
Max. P 0.910171
window15002

overview

Window 2

Location 24,899,599 – 24,899,719
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 94.33
Mean single sequence MFE -35.28
Consensus MFE -28.90
Energy contribution -29.86
Covariance contribution 0.96
Combinations/Pair 1.08
Mean z-score -1.84
Structure conservation index 0.82
SVM decision value 1.07
SVM RNA-class probability 0.910171
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24899599 120 + 27905053
GCAAGUGCAAUUAAUAUGUAUCUGUUAACUUCCGGGUGCCUGCAAUACAUGGGAAUGUAUCUGUGAGUGCGUACGUGUGAUGCAUUCCACUCCACUCGCUCUGCAUAUUGCACUUUGCUU
(((((((((((......(((((((........))))))).((((((((((....))))))..(((((((.(...(((.((.....))))).))))))))..)))).))))))).)))).. ( -39.20)
>DroSec_CAF1 12596 118 + 1
GCAAGUGCAAAUAAUCUGUAUCUGUUAACUUCCUGGUGCCUUCAAUGCAUGGGAAUGUAUCUGUGAGUGCGUACG--UGAUGCAUUCCACUCCACUCGCUCUGCAUAUAGCACUUUGCUU
((((((((......................(((((.(((.......))))))))(((((...(((((((.(...(--((........))).))))))))..)))))...)))).)))).. ( -32.20)
>DroSim_CAF1 11919 120 + 1
GCAAGUGCAAUUAAUCUGUAUCUGUUAACUUCCGGGUGCCUUCAAUGCAUGGGAAUGUAUCUGUGAGUGCGUACGUGUGAUGCAUUCCACUCCACUCGCUCUGCAUAUUGCACUUUGCUU
(((((((((((......(((((((........))))))).....(((((.(((...((....((((((((((.......))))))).)))...))...))))))))))))))).)))).. ( -37.30)
>DroEre_CAF1 12666 120 + 1
GCAAGUGCAAUUAAUCUGUAUCUGUUAACUUCCGGGCGCCUUCAAUGUGUGGGAAUGUAUCUGUGAGCGCGUACGUGUGAUGUAUUCCACUCCACUCGCUCUGCAUAUUGCACUUUGCUU
(((((((((((..................(((((.(((.......))).)))))(((((.....(((((.((..(((.((.....)))))...)).))))))))))))))))).)))).. ( -33.20)
>DroYak_CAF1 12767 120 + 1
GCAAGUGCAAUUAAUCUGUAUCUGUUAACUUCCGGGCGCCUUCAAUGUGUGCGAAUGUAUCUGUGAGCGCGUACGUGUGAUGCAUUCCACUCUACUCGCUCUGCAUAUUGCACUUUGCUU
(((((((((((.....((((...(....)....(((((........(.(((.(((((((((.....((((....)))))))))))))))).)....))))))))).))))))).)))).. ( -34.50)
>consensus
GCAAGUGCAAUUAAUCUGUAUCUGUUAACUUCCGGGUGCCUUCAAUGCAUGGGAAUGUAUCUGUGAGUGCGUACGUGUGAUGCAUUCCACUCCACUCGCUCUGCAUAUUGCACUUUGCUU
((((((((((.......(((((((........))))))).....(((((.(((...((....((((((((((.......))))))).)))...))...)))))))).)))))).)))).. (-28.90 = -29.86 +   0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:32:59 2006