Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 24,899,169 – 24,899,285 |
Length | 116 |
Max. P | 0.505087 |
Location | 24,899,169 – 24,899,285 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.76 |
Mean single sequence MFE | -17.07 |
Consensus MFE | -12.39 |
Energy contribution | -12.55 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.16 |
Mean z-score | -1.53 |
Structure conservation index | 0.73 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.505087 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24899169 116 - 27905053 AUUCCCCAACUAUAACUUUUUCGCACUGCAUCAGCAGCUCUCUUACCCACUCGAAUCAUGCUAUACAACUCGAUGGUUCUACUGGCCAUCCA----UCCAUCUUCAAUUUUGGCAAGUGA ....................((((.((((....)))).....................(((((........(((((......(((....)))----.)))))........))))).)))) ( -18.39) >DroSec_CAF1 12172 116 - 1 AUUCCCCAACUAUAACUUUUCCGCACUGCAUCAGCAGCUCUCUUACCCACCCGAAUCAUGCUAUAGAACUCGAUGGUUUUACUGGCCAUCCA----UCCAUCUUCAAUUUUGGCAAGUGA .....................(((.((((....)))).....................(((((..(....)(((((((.....)))))))..----..............))))).))). ( -18.50) >DroSim_CAF1 11627 120 - 1 AUUCCCCAACUAUAACUUUUCCGCACUGCAUCAGCAGCUCUCUUACCCACCCGAAUCAUACUAUACAACUCGAUGGUUUUACUGGCCAUCCAUCCAUCCAUCUUCAAUUUUGGCAAGUGA ..............((((..((...((((....))))..................................(((((((.....))))))).....................)).)))).. ( -15.70) >DroEre_CAF1 12234 116 - 1 AUUCUCCAACUAUAACUUCUCCGCACUGCAUCAGCAGCUCUCUUGGCCAACCGAACCAUUCCAUACAACUCGAUGAUUGUACUAGCCAUCCA----UCCAUCUUCAAUUUUGGCAAGUGA .....................(((.((((....))))........(((((..((.....))..........((((..((.......))..))----))...........)))))..))). ( -15.40) >DroYak_CAF1 12359 93 - 1 AUUCCCAAACUAUAACUUUUCCG-----------------------CCAUCCGAACCAUUUCAUACAACUCGAUGGUUCCACUAGCCAUCCA----UCCAUCUUCAAUUUUGGCAAGUGA .......................-----------------------......((((((((...........))))))))((((.((((....----..............)))).)))). ( -17.37) >consensus AUUCCCCAACUAUAACUUUUCCGCACUGCAUCAGCAGCUCUCUUACCCACCCGAAUCAUGCUAUACAACUCGAUGGUUCUACUGGCCAUCCA____UCCAUCUUCAAUUUUGGCAAGUGA .........................((((....))))...............(((((((.............)))))))((((.((((......................)))).)))). (-12.39 = -12.55 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:32:58 2006