Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 24,898,465 – 24,898,570 |
Length | 105 |
Max. P | 0.623921 |
Location | 24,898,465 – 24,898,570 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 87.19 |
Mean single sequence MFE | -26.54 |
Consensus MFE | -21.76 |
Energy contribution | -22.84 |
Covariance contribution | 1.08 |
Combinations/Pair | 1.11 |
Mean z-score | -1.51 |
Structure conservation index | 0.82 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.623921 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24898465 105 + 27905053 UAACUUCUCCUAAUCCAAAGGCAGUUCAAUCAGGAACAAUGAACCAAACAAAGAGCCAACAACAAGGAGCGCGGAACUGGACGUGGAGUAGGAGCUUGAGUUGGA------------ ((((((((((((.((((....((((((..(((.......)))..........(..((........))..)...))))))....)))).))))))...))))))..------------ ( -29.00) >DroSec_CAF1 11456 117 + 1 UAACUCCGCCUAAUCCAAAGGCAGUUCAAUCAGGAACAAUGAACCAAACAAAGAGCCAACAACAAGGAGCGCGGAACUGGACGUGGAGUAGGAGUUAGAGUUGGAGUUGGAGCUGAA ((((((((((((.((((....((((((..(((.......)))..........(..((........))..)...))))))....)))).)))).........))))))))........ ( -28.70) >DroSim_CAF1 10924 105 + 1 UAACUCCGCCUAAUCCAAAGGCAGUUCAAUCAGGAACAAUGAACCAAACAAAGAGCCAACAACAAGGAGCGCGGAACUGGACGUGGAGUAGGAGUUAGAGUUGGA------------ ((((((..((((.((((....((((((..(((.......)))..........(..((........))..)...))))))....)))).)))).....))))))..------------ ( -26.70) >DroEre_CAF1 11524 100 + 1 UAACUUCUCCUAAUCCAAAGGCAGUUCAAUCAGGAACAAUGAACCAAACAAAGAGCCAGCAAUAAGGAGCGCGGAGUUGGAUGUGGAGUAGGAGUUGGAG----------------- ...((.((((((.((((......((((......))))......((((.....(..((........))..)......))))...)))).))))))..))..----------------- ( -25.10) >DroYak_CAF1 11659 100 + 1 UAACUUCUGCUAAUCCAAAGGCAGUUCAAUCAGGAACAAUGAACCAAACAAAGAGCCAGCAACAAGGAGCGCGGAGUUGAACGUGGAGUAGGAGUAGGAG----------------- ...((((((((..((((......(((((((..((.........))..........((.((........))..)).))))))).)))).....))))))))----------------- ( -23.20) >consensus UAACUUCUCCUAAUCCAAAGGCAGUUCAAUCAGGAACAAUGAACCAAACAAAGAGCCAACAACAAGGAGCGCGGAACUGGACGUGGAGUAGGAGUUAGAGUUGGA____________ ((((((((((((.((((....((((((..(((.......)))..........(..((........))..)...))))))....)))).))))))...)))))).............. (-21.76 = -22.84 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:32:54 2006