Locus 9370

Sequence ID 3R_DroMel_CAF1
Location 24,898,143 – 24,898,254
Length 111
Max. P 0.511698
window14996

overview

Window 6

Location 24,898,143 – 24,898,254
Length 111
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 94.59
Mean single sequence MFE -26.48
Consensus MFE -25.58
Energy contribution -25.10
Covariance contribution -0.48
Combinations/Pair 1.12
Mean z-score -1.01
Structure conservation index 0.97
SVM decision value -0.04
SVM RNA-class probability 0.511698
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24898143 111 - 27905053
UAAUUAGCAGAACCUUUAGGGGUAAUUGAUUGAUUACUGAAUGAUCUGACAGAGCGGAAAAGGGGAAAUUCGGUCUGCCAGGCGGAUUAAGUAAGCCAUAGAUCAAGCAAA
......((....((....))(((((((....)))))))...(((((((.((((.((((..........)))).))))...(((...........))).))))))).))... ( -27.40)
>DroSec_CAF1 11134 111 - 1
UAAUUAGCAGAACCUUUAGAGGUAAUUGAUUGAUUACUGAAUGAUCUGACGGAGCGAAACAGGGGGAAUUCGGUCUGCCAGGCGGAUUAAGUAAGCCAUAGAUCAAGCAAA
((((((((((.((((....))))..))).))))))).((..(((((((.((((.((((..........)))).))))...(((...........))).)))))))..)).. ( -26.60)
>DroSim_CAF1 10602 111 - 1
UAAUUAGCAGAACCUUUAGAGGUAAUUGAUUGAUUACUGAAUGAUCUGACGGAGCGAAACAGGGGGAAUUCGGUCUGCCAGGCGGAUUAAGUAAGCCAUAGAUCAAGCAAA
((((((((((.((((....))))..))).))))))).((..(((((((.((((.((((..........)))).))))...(((...........))).)))))))..)).. ( -26.60)
>DroEre_CAF1 11202 111 - 1
UAAUUAGCAGAACCUUUAGGGGUAAUUGAUUGAUUACUGAAUGAUCUGACAGAGCGGAACAGAGGGAGUUCGGUCUGCCAACCGGAUUAAGUAAGCCAUAGAUCAAGCAAA
......((...((((....))))..((((((..(((((...(((((((...(.(((((...(((....)))..))))))...))))))))))))......))))))))... ( -25.90)
>DroYak_CAF1 11328 111 - 1
UAAUUAGCAGAACCUUUAGGGGUAAUUGAUUGAUUACUGAACGAACCGACAGAGCGGAACGGGGGGAAUUCGGUCUGCCAAGCGGAUUAAGUAAGCCAUAGAUCAAGCAAA
......((...((((....))))..((((((..(((((....((.(((...(.(((((.((((.....)))).))))))...))).)).)))))......))))))))... ( -25.90)
>consensus
UAAUUAGCAGAACCUUUAGGGGUAAUUGAUUGAUUACUGAAUGAUCUGACAGAGCGGAACAGGGGGAAUUCGGUCUGCCAGGCGGAUUAAGUAAGCCAUAGAUCAAGCAAA
......((...((((....))))..((((((..(((((...(((((((.((((.((((..........)))).)))).....))))))))))))......))))))))... (-25.58 = -25.10 +  -0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:32:53 2006