Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,121,855 – 3,121,945 |
Length | 90 |
Max. P | 1.000000 |
Location | 3,121,855 – 3,121,945 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 70.57 |
Mean single sequence MFE | -16.20 |
Consensus MFE | -11.65 |
Energy contribution | -11.77 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.25 |
Mean z-score | -3.80 |
Structure conservation index | 0.72 |
SVM decision value | 7.20 |
SVM RNA-class probability | 1.000000 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3121855 90 + 27905053 -UAG-----UUAGCCAAAUAAUAUUGAGUUUCUUAGCUCACUUUUGCAUUUCAUGUAACUAACUCACUAACU-----AA-CUAUUAACAAACAUUUACAACA -(((-----((((...........((((((....))))))...((((((...))))))........))))))-----).-...................... ( -13.20) >DroSec_CAF1 9503 79 + 1 AUAGUUAAUUUAGCCAAAUAAUAGUGGGUUUCUUAGCUCACUAUUGCAUUUCAC-UAACUAACU----------------------AUUAACAUUUACAACA (((((((..((((..(((((((((((((((....)))))))))))..))))..)-))).)))))----------------------)).............. ( -17.90) >DroSim_CAF1 14764 98 + 1 UUAGUUAAUUUAUCCAAAUAAUAGUGGGCUUCUUAGCUCACUGUUGCAUUUCAUGUAACCAACUCAAAAUCAAAUUUAACCUAUU-ACAAACAUUUACA--- ...(((((..............((((((((....))))))))(((((((...)))))))................))))).....-.............--- ( -17.50) >consensus _UAGUUAAUUUAGCCAAAUAAUAGUGGGUUUCUUAGCUCACUAUUGCAUUUCAUGUAACUAACUCA__A_C______AA_CUAUU_ACAAACAUUUACAACA ..................((((((((((((....))))))))))))........................................................ (-11.65 = -11.77 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:57 2006