Locus 9369

Sequence ID 3R_DroMel_CAF1
Location 24,897,510 – 24,897,618
Length 108
Max. P 0.916196
window14995

overview

Window 5

Location 24,897,510 – 24,897,618
Length 108
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 98.15
Mean single sequence MFE -28.30
Consensus MFE -26.46
Energy contribution -26.70
Covariance contribution 0.24
Combinations/Pair 1.03
Mean z-score -1.53
Structure conservation index 0.93
SVM decision value 1.11
SVM RNA-class probability 0.916196
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24897510 108 + 27905053
AAGUUGACCCAGUUCCAAGUGGGGGUAUGAGAUACAAUGACCUUAAUGUUGUUGCCCAGCAAAAGUGGAGCUUAACUUUGUGUGCAAUGUUGAAGAAAACUUUGCAUA
((((((....(((((((..((.(((((......(((((.........))))))))))..))....)))))))))))))..(((((((.(((......))).))))))) ( -28.40)
>DroSec_CAF1 10506 108 + 1
AAGUUGACCCAGUUCCAAGUGAGGGUAUGAGAUACAAUGACCUUAAUGUUGUUGGCCAGCAAAAGUGGAGCUUAACUUUGUGUGCAAUGUUGAAGAAAACUUUGCAUA
((((((....(((((((..((..(((........(((..((......))..))))))..))....)))))))))))))..(((((((.(((......))).))))))) ( -28.00)
>DroSim_CAF1 9983 108 + 1
AAGUUGACCCAGUUCCAAGUGAGGGUAUGAGAUACAAUGACCUUAAUGUUGUUGGCCAGCAAAAGUGGAGCUUAACUUUGUGUGCAAUGUUGAAGAAAACUUUGCAUA
((((((....(((((((..((..(((........(((..((......))..))))))..))....)))))))))))))..(((((((.(((......))).))))))) ( -28.00)
>DroEre_CAF1 10568 107 + 1
AAGUUGACCCAGUUCCAAGUCUGGGUAUGAGAUACAAUGACCUUAAUGUUGUUGGCCAGCAA-AGUGGAGCUUAACUUUGUGUGCAAUGUUGAAGAAAACUUUGCAUA
..(((.((((((........))))))....))).(((..((......))..)))....((((-(((........)))))))((((((.(((......))).)))))). ( -29.80)
>DroYak_CAF1 10700 108 + 1
AAGUUGACCCAGUUCCAAGUGGGGGUAUGAGAUACAAUGACCUUAAUGUUGUUGGCCAGCAAAAGUGGAGCUUAACUUUGUGUGCAAUGUUGAAGAAAACUUUGCAUA
((((((....(((((((..((..(((........(((..((......))..))))))..))....)))))))))))))..(((((((.(((......))).))))))) ( -27.30)
>consensus
AAGUUGACCCAGUUCCAAGUGAGGGUAUGAGAUACAAUGACCUUAAUGUUGUUGGCCAGCAAAAGUGGAGCUUAACUUUGUGUGCAAUGUUGAAGAAAACUUUGCAUA
((((((....(((((((..(((((.(((........))).))))).(((((.....)))))....)))))))))))))..(((((((.(((......))).))))))) (-26.46 = -26.70 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:32:52 2006