Locus 9367

Sequence ID 3R_DroMel_CAF1
Location 24,896,208 – 24,896,324
Length 116
Max. P 0.860208
window14992

overview

Window 2

Location 24,896,208 – 24,896,324
Length 116
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 93.71
Mean single sequence MFE -37.41
Consensus MFE -31.31
Energy contribution -31.63
Covariance contribution 0.32
Combinations/Pair 1.06
Mean z-score -1.60
Structure conservation index 0.84
SVM decision value 0.82
SVM RNA-class probability 0.860208
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24896208 116 - 27905053
CUACGCCCCGAUUUCGAUUUGGAGAGCUCGUCAAGCGGUAAAAUUUUGUUAAUAAUGCAACUUGGCUGAGCAUCGGAAAUGCAUGCUGAUGUUUUGAGUGCGCGUGGAUGGGGU----GU
..((((((((.(((((((.......((((((((((..(((..(((.....)))..)))..)))))).)))))))))))((((..(((.(.....).)))..))))...))))))----)) ( -38.81)
>DroSec_CAF1 9189 116 - 1
CUUCGCCCCGAUUUCGAUUUGGAGAGCUCAUCAGGCUGUAAAAUUUUGUUAAUAAUGCAACGUGGCUGAGCAUCGGAAAUGCAUGCUGAUGUUUUGUGUGCGCGUGGAUGGGGU----GU
...(((((((.(..((.(((.((..((((((((.(.((((..(((.....)))..)))).).))).))))).)).)))..((((((.........)))))).))..).))))))----). ( -35.10)
>DroSim_CAF1 8662 116 - 1
CCACGCCCCGAUUUCGAUUUGGAGAGCUCGUCAGGCGGUAAAAUUUUGUUAAUAAUGCAACUUGGCUGAGCAUCGGAAAUGCAUGCUGAUGUUUUGUGUGCGCGUGGAUGGGGU----GU
((((((.((((((((......))))((((((((((..(((..(((.....)))..)))..)))))).)))).))))....((((((.........)))))))))))).......----.. ( -39.60)
>DroEre_CAF1 9253 116 - 1
UUUAGCCCCGAUUUCGAUUUGCAGAGCUCGUCAGGCGGUAAAAUUUUGUUAAUAAUGCAACUUGGCUGAGCAUCGGAAAUGCAUGCUGAUGUUCUGUGUGCGUGUGGAUGGGGU----GU
....((((((.(((((((.......((((((((((..(((..(((.....)))..)))..)))))).)))))))))))((((((((.(.....).)))))))).....))))))----.. ( -37.81)
>DroYak_CAF1 9391 120 - 1
UUUCGUCCCGAUUUCGAUUUGGAGAGCUCGUCAGGCGGUAAAAUUUUGUUAAUAAUGCAACUUGGCUGAGCAUCGGAAAUGCAUGCUGAUGUUUUGUGUGCGUGUGGAUGGGGUGUGUGU
(..((((((..(((((((.......((((((((((..(((..(((.....)))..)))..)))))).)))))))))))((((((((.........))))))))).)))))..)....... ( -35.71)
>consensus
CUUCGCCCCGAUUUCGAUUUGGAGAGCUCGUCAGGCGGUAAAAUUUUGUUAAUAAUGCAACUUGGCUGAGCAUCGGAAAUGCAUGCUGAUGUUUUGUGUGCGCGUGGAUGGGGU____GU
....((((((.(((((((.......((((((((((..(((..(((.....)))..)))..)))))).))))))))))).(((((((.........)))))))......))))))...... (-31.31 = -31.63 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:32:49 2006