Locus 9366

Sequence ID 3R_DroMel_CAF1
Location 24,895,509 – 24,895,628
Length 119
Max. P 0.883948
window14991

overview

Window 1

Location 24,895,509 – 24,895,628
Length 119
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 97.96
Mean single sequence MFE -22.10
Consensus MFE -21.80
Energy contribution -21.80
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.34
Structure conservation index 0.99
SVM decision value 0.93
SVM RNA-class probability 0.883948
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24895509 119 - 27905053
UCUCUAAUGUAGAGAACUUGUGCGGUUGAUUGCAACGUUGCCAGACUUCACAGGCAAACGUCGAAAAUUAAUUAUGGCUCCCCAAACACACACACACAAAACAACAAAAACAACAGCGA
((((((...))))))..(((((.((((((((...((((((((..........))).)))))....)))))))..(((....)))........).))))).................... ( -22.10)
>DroSec_CAF1 8533 117 - 1
UCUCUAAUGUAGAGAACUUGUGCGGUUGAUUGCAACGUUGCCAGACUUCACAGGCAAACGUCGAAAAUUAAUUAUGGCUCCCCAAACACAC--ACACAAAACAACAAAAACAACAGCAA
((((((...))))))..(((((.((((((((...((((((((..........))).)))))....)))))))..(((....)))......)--.))))).................... ( -22.10)
>DroSim_CAF1 8016 117 - 1
UCUCUAAUGUAGAGAACUUGUGCGGUUGAUUGCAACGUUGCCAGACUUCACAGGCAAACGUCGAAAAUUAAUUAUGGCUCCCCAAACACAC--ACACAAAACAACAAAAACAACAGCGA
((((((...))))))..(((((.((((((((...((((((((..........))).)))))....)))))))..(((....)))......)--.))))).................... ( -22.10)
>DroEre_CAF1 8563 117 - 1
UCUCUAAUGUAGAGAACUUGUGCGGUUGAUUGCAACGUUGCCAGACUUCACAGGCAAACGUCGAAAAUUAAUUAUGGCUCCCCAAACACAC--ACACAAAACAACAAAAACAACAGCAG
((((((...))))))..(((((.((((((((...((((((((..........))).)))))....)))))))..(((....)))......)--.))))).................... ( -22.10)
>DroYak_CAF1 8699 117 - 1
UCUCUAAUAUAGAGAACUUGUGCGGUUGAUUGCAACGUUGCCAGACUUCACAGGCAAACGUCGAAAAUUAAUUAUGGCUCCCCAAACACAC--ACACAAAACAACAAAAACAACAGCAG
((((((...))))))..(((((.((((((((...((((((((..........))).)))))....)))))))..(((....)))......)--.))))).................... ( -22.10)
>consensus
UCUCUAAUGUAGAGAACUUGUGCGGUUGAUUGCAACGUUGCCAGACUUCACAGGCAAACGUCGAAAAUUAAUUAUGGCUCCCCAAACACAC__ACACAAAACAACAAAAACAACAGCAA
((((((...))))))..(((((.((((((((...((((((((..........))).)))))....)))))))).(((....)))..........))))).................... (-21.80 = -21.80 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:32:48 2006