Locus 9365

Sequence ID 3R_DroMel_CAF1
Location 24,893,368 – 24,893,473
Length 105
Max. P 0.909679
window14990

overview

Window 0

Location 24,893,368 – 24,893,473
Length 105
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 98.10
Mean single sequence MFE -23.90
Consensus MFE -22.82
Energy contribution -23.06
Covariance contribution 0.24
Combinations/Pair 1.04
Mean z-score -1.46
Structure conservation index 0.95
SVM decision value 1.07
SVM RNA-class probability 0.909679
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24893368 105 + 27905053
UUUC-CCUAAUGAAAUUGCUUUGAUUUCUCGAAAAGCGCGUAAAGUUUUCUCAUCUAGCGUCGAGACUUUUGCAGCAGCAAAUUACACGAAUCCUUGUGGCUUUUC
....-......((((((.....))))))..(((((((((((((((...((((..(....)..)))).)))))).)).........(((((....)))))))))))) ( -23.10)
>DroSec_CAF1 6379 105 + 1
UUUC-CCUAAUGAAAUUGCUUUGAUUUCUCGAAAAGCUGGUAAAGUUUUCUCAUCUAGCGUCGAGACUUUUGCAGCAGCAAAUUACACGAAUCCUUGUGGCUUUUC
....-..........((((((((...((((((...(((((...((....))...))))).))))))......))).)))))....(((((....)))))....... ( -24.60)
>DroSim_CAF1 5921 105 + 1
CUUC-CCUAAUGAAAUUGCUUUGAUUUCUCGAAAAGCUGGUAAAGUUUUCUCAUCUAGCGUCGAGACUUUUGCAGCAGCAAAUUACACGAAUCCUUGUGGCUUUUC
....-..........((((((((...((((((...(((((...((....))...))))).))))))......))).)))))....(((((....)))))....... ( -24.60)
>DroEre_CAF1 6410 105 + 1
UUUC-CCUAAUGAAAUUGCUUUGAUUUCUCGAAAAGCUGGUAAAGUUUUCUCAUCUAGCGUCGAGACUUUUGCAGCAGCAAAUUACAUGAAUCCUUGUGGCUUUUC
....-......((((..(((..((((((((((...(((((...((....))...))))).))))))..(((((....))))).......)))).....))).)))) ( -22.60)
>DroYak_CAF1 6529 106 + 1
UUUCCCCUAAUGAAAUUGCUUUGAUUUCUCGAAAAGCUGGUAAAGUUUUCUCAUCUAGCGUCGAGACUUUUGCAGCAGCAAAUUACACGAAUCCUUGUGGCUUUUC
...............((((((((...((((((...(((((...((....))...))))).))))))......))).)))))....(((((....)))))....... ( -24.60)
>consensus
UUUC_CCUAAUGAAAUUGCUUUGAUUUCUCGAAAAGCUGGUAAAGUUUUCUCAUCUAGCGUCGAGACUUUUGCAGCAGCAAAUUACACGAAUCCUUGUGGCUUUUC
...............((((((((...((((((...(((((...((....))...))))).))))))......))).)))))....(((((....)))))....... (-22.82 = -23.06 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:32:47 2006