Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 24,893,032 – 24,893,145 |
Length | 113 |
Max. P | 0.980274 |
Location | 24,893,032 – 24,893,145 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 91.14 |
Mean single sequence MFE | -30.61 |
Consensus MFE | -23.19 |
Energy contribution | -24.03 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.11 |
Mean z-score | -3.01 |
Structure conservation index | 0.76 |
SVM decision value | 1.86 |
SVM RNA-class probability | 0.980274 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24893032 113 - 27905053 CUAAUCAAAUUUCCAUUCGCCAGCAUUGUUCUUGGCCCCGUUUGGC---ACUC---GUAAGUCAUUGCAAAAAAGCGAAAAAGCCAAGAGCAAUUAGGCGCAACAAAGCAACAAUUGCA .................((((...((((((((((((..(((((.((---(..(---....)....)))....))))).....))))))))))))..)))).......(((.....))). ( -32.10) >DroSec_CAF1 6041 116 - 1 CUAAUCAAAUUUCCAUUCGCCAGCAUUGUUCUUGGCCCCGUUCGCCACCACUC---GUAAGUCAUUGCACAAAAGCGAAAAAGCCAAGAGCAAUUAGGCGCAACAAAGCAACAAUUGCA .................((((...((((((((((((....(((((........---((((....))))......)))))...))))))))))))..)))).......(((.....))). ( -32.94) >DroSim_CAF1 5585 113 - 1 CUAAUCAAAUUUCCAUUCGCCAGCAUUGUUCUUGGCCCCGUUCGCC---ACUC---GUAAGUCAUUGCAGAAAAGCGAAAAAGCCAAGAGCAAUUAGGCGCAACAAAGCAACAAUUGCA .................((((...((((((((((((....(((((.---..((---((((....)))).))...)))))...))))))))))))..)))).......(((.....))). ( -35.10) >DroEre_CAF1 6059 111 - 1 CUAAUCAAAUUUCUAUUCCACAGCAUUGUUUUUGGCCCCGUUCGGC---ACUCGUCGU-----UUUGCACAAAAGCGAAAAAGUCAAGAGCAAUUAGGCGCAAGAAAGCAACAAUUGCA ...............(((....((((((((((((((......((((---....))))(-----(((((......))))))..))))))))))))...))....))).(((.....))). ( -24.50) >DroYak_CAF1 6174 116 - 1 CUAAUCAAAUUUCCAUUCCCCAGCAUUGUUCUUGGCCCCGUUUGCC---ACUCGUCGUAAGUCAUUGCACAAAAGCGAAAAAGCCAAGAGCAAUUAGGCGCUACAAAGCAACAAUUGCA ......................((((((((((((((....(((((.---....((.((((....))))))....)))))...)))))))))))......(((....)))......))). ( -28.40) >consensus CUAAUCAAAUUUCCAUUCGCCAGCAUUGUUCUUGGCCCCGUUCGCC___ACUC___GUAAGUCAUUGCACAAAAGCGAAAAAGCCAAGAGCAAUUAGGCGCAACAAAGCAACAAUUGCA .................((((...((((((((((((....(((((...........((((....))))......)))))...))))))))))))..)))).......(((.....))). (-23.19 = -24.03 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:32:47 2006