| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,892,773 – 24,892,886 |
| Length | 113 |
| Max. P | 0.560531 |
| Location | 24,892,773 – 24,892,886 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.21 |
| Mean single sequence MFE | -28.26 |
| Consensus MFE | -15.16 |
| Energy contribution | -16.92 |
| Covariance contribution | 1.76 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.560531 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24892773 113 + 27905053 UGAUGAAAAAUCCUGACUCAGCUCGAGUUUCUA-------ACGAUGAGUCAUUAGAGUUACUUGUAUGCAAAGUAAUAUGUACGUGUAUUUACCUAAAAGGGCUAGUACUCGUGCCUUAA ((((((...(((..(((((.....)))))....-------..)))...))))))..(((((((.......)))))))..(((((.(((((..(((....)))..))))).)))))..... ( -28.90) >DroSec_CAF1 5782 113 + 1 UGAUGAAAAAUUCUAACUCAGCUCGAGCUUCUA-------ACGAUGACUCAUUAGAGUUACUUGUAUUCAAUGUAAUAUGUACGUGUAUUUGCCUAAAAGGGCUAGUACUCGUGCCUUAA ...((((......((((((.....((((.((..-------..)).).)))....))))))......)))).........(((((.(((((.((((....)))).))))).)))))..... ( -28.40) >DroSim_CAF1 5326 113 + 1 UGAUGAAAAAUCCUAACUCAGCUCGAGUUUCUA-------ACGAUGACUCAUUAGAGUUACUUGUAUUCGAAGAUUUAUGUACGUGUAUUUGCCUAAAAGGGCUAGUACUCGUGCCUUAA .......(((((..(((((.....)))))....-------((((((((((....)))))).)))).......)))))..(((((.(((((.((((....)))).))))).)))))..... ( -30.40) >DroEre_CAF1 5795 120 + 1 UAAUGAAAAAUCGUGACUCAGCUCGUAUUUCUAUGAAAUUUCGAUGACUCAUUAGAGUUUCUUGUAUGCAAAGUAAUUUGUAUGUGUAUUUGCCUAAAAGGGCUAAUAUCCGGGCUAUAA ..((((....)))).....((((((.........(((((((..(((...)))..)))))))...((((((((....)))))))).(((((.((((....)))).))))).)))))).... ( -28.90) >DroYak_CAF1 5921 109 + 1 UGAUGAAAAAUAAUGACUCAGCCCGAAUUUCUA-----------UGACUCAUUAAAGUCACUUGUAUACAAAGUAAUUUGUAUGUGUACUUGGCUGAAAGGGCUAUUAUUUUUGCUAUGA .....((((((((((.(((((((..........-----------(((((......)))))....((((((((....)))))))).......))))))...)..))))))))))....... ( -24.70) >consensus UGAUGAAAAAUCCUGACUCAGCUCGAGUUUCUA_______ACGAUGACUCAUUAGAGUUACUUGUAUGCAAAGUAAUAUGUACGUGUAUUUGCCUAAAAGGGCUAGUACUCGUGCCUUAA ..............(((((.....)))))...............((((((....))))))...................(((((.(((((.((((....)))).))))).)))))..... (-15.16 = -16.92 + 1.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:32:46 2006