Locus 9362

Sequence ID	3R_DroMel_CAF1
Location	24,892,203 – 24,892,296
Length	93
Max. P	0.919150

overview

Window 7

Location	24,892,203 – 24,892,296
Length	93
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	92.69
Mean single sequence MFE	-29.72
Consensus MFE	-24.16
Energy contribution	-24.04
Covariance contribution	-0.12
Combinations/Pair	1.08
Mean z-score	-1.85
Structure conservation index	0.81
SVM decision value	1.13
SVM RNA-class probability	0.919150
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24892203 93 + 27905053
CAAAGACGUUUUGGCAGUGUUUACAUUGGAAACGUUUUCCAUCUACCGGCUGAUAGAUUGUUAUUAUUACGGCCGGGGGCAUAACGCUCUGGA
..((((((((((..(((((....)))))))))))))))(((....(((((((...(((....)))....)))))))((((.....))))))). ( -30.00)
>DroSec_CAF1 5211 93 + 1
CAAAGACGUGUUGGCAGUGUUUACACUGGAAACAUUUUCCAUCUACCGGUUGAUGGAUUGUUAUUAUCUCGGCCGGGGGCAUAACGCUCUGGA
.......(((((..(((((....)))))..)))))..((((....((((((((..(((.......)))))))))))((((.....)))))))) ( -30.50)
>DroSim_CAF1 4755 93 + 1
CAAAGACGUGUUGGCAGUGUUUACACUGGAAACGUUUUCCAUCUACCGGUUGAUGGAUUGUUAUUAACACGGCCGGGGGCAUAACGCUCUGGA
......(((((((((((((....)))))..((((...((((((........)))))).)))).)))))))).((((((........)))))). ( -32.60)
>DroEre_CAF1 5234 92 + 1
CAAAGACGUGUUGGCAGUGUGUACACUGGAAAUGUUUUCCAUCUACCGGUUGAUGGAUUGUUAUUAUUGCGGCCGG-GGCAUAACGCUCUGGA
......(((.....(((((....)))))..((((...((((((........))))))....))))...))).((((-(((.....))))))). ( -28.30)
>DroYak_CAF1 5331 93 + 1
CAAAGACGUGUUGGCACUCUUUACACUGGAAAUGUUUUCCACCUACCGGUUGAUGGAUUGUUAUUAUUGCGACCGGGGGCAUAACGCUCUGGA
.(((((.(((....))))))))....(((((.....)))))((..(((((((...(((....)))....)))))))((((.....)))).)). ( -27.20)
>consensus
CAAAGACGUGUUGGCAGUGUUUACACUGGAAACGUUUUCCAUCUACCGGUUGAUGGAUUGUUAUUAUUACGGCCGGGGGCAUAACGCUCUGGA
...(((.((((((((...........(((((.....)))))....(((((((...(((....)))....)))))))..)).)))))))))... (-24.16 = -24.04 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:32:45 2006