Locus 9360

Sequence ID 3R_DroMel_CAF1
Location 24,889,394 – 24,889,514
Length 120
Max. P 0.857779
window14984

overview

Window 4

Location 24,889,394 – 24,889,514
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 89.66
Mean single sequence MFE -30.14
Consensus MFE -23.30
Energy contribution -23.30
Covariance contribution 0.00
Combinations/Pair 1.07
Mean z-score -1.94
Structure conservation index 0.77
SVM decision value 0.81
SVM RNA-class probability 0.857779
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24889394 120 - 27905053
AGCCGAUGGUUAGUCGAUACUAUCGAUGUAUACAGAUAACUGGCAGCAUCGAUGUUUGCCCCGCAACCAUCGAUUGUAUUCACUCUAAAAAAUAUGGUUUUCUACAAGAAUUCAAUGUUU
...((((((((.(..(..((.((((((((...(((....)))...))))))))))...)..)..)))))))).................((((((.(..(((.....)))..).)))))) ( -28.90)
>DroSec_CAF1 2468 120 - 1
AGCCGAUGGUUAGUCGAUACUAUCGAUGUAUACAGAUAACUGGCAGCAUCGAUGUUUGCCCCGCAACCAUCGAUUGUAUUCACUUUAAAUAUUAUGGGUUUCAACCAGAAUUCAAUGUUU
((((.(((((.(((.(((((.((((((((...(((....)))...)))))((((.((((...)))).))))))).))))).)))......))))).)))).................... ( -30.00)
>DroSim_CAF1 1986 120 - 1
AGCCGAUGGUUAGUCGAUACUAUCGAUGUAUACAGAUAACUGGCAGCAUCGAUGUUUGCCCCGCAACCAUCGAUUGUAUUCACUUUAAAAAUUAUGGGUUUCAACCAUAAUUCAAUGUUU
...((((((((.(..(..((.((((((((...(((....)))...))))))))))...)..)..)))))))).................((((((((.......))))))))........ ( -32.60)
>DroEre_CAF1 2464 119 - 1
AGCCGAUGGUUAUUCGAUACUAUCGAUGUAUCUAGAAAACUGACAGAAUCGAUGUUUGCCUCGCAGCCAUCGAUUGUUUUCACUCCAA-AAUUAUGGUUUUGUUCAAGAAUUCAUUGUUA
...((((((..(((((((((.......)))))..((((((......((((((((.((((...)))).))))))))))))))....(((-(((....)))))).....))))))))))... ( -28.50)
>DroYak_CAF1 2471 119 - 1
AGCCGAUGGUUAGUCGAUACUAUCGAUGUAUCCAGAAAACUGGCAGCAUCGAUGUUUGCCUUGCAGCCAUCGAUUGUUUUCACUCCGA-AAUUAUGGUUUUCUUCAAGAAUUCAUUGUUA
...((((((((((.(((.((.((((((((..((((....))))..))))))))))))).))...))))))))..((..(((.....((-((.......)))).....)))..))...... ( -30.70)
>consensus
AGCCGAUGGUUAGUCGAUACUAUCGAUGUAUACAGAUAACUGGCAGCAUCGAUGUUUGCCCCGCAACCAUCGAUUGUAUUCACUCUAAAAAUUAUGGUUUUCUACAAGAAUUCAAUGUUU
...((((((((.........(((((((((...(((....)))...)))))))))...((...))))))))))......................((..(((......)))..))...... (-23.30 = -23.30 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:32:42 2006