Locus 9355

Sequence ID 3R_DroMel_CAF1
Location 24,877,132 – 24,877,233
Length 101
Max. P 0.620802
window14973

overview

Window 3

Location 24,877,132 – 24,877,233
Length 101
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 77.71
Mean single sequence MFE -30.92
Consensus MFE -19.93
Energy contribution -20.35
Covariance contribution 0.42
Combinations/Pair 1.21
Mean z-score -1.32
Structure conservation index 0.64
SVM decision value 0.18
SVM RNA-class probability 0.620802
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24877132 101 - 27905053
UGAAAAGUUAAGA-------------ACUUACUGUUCGGAAAAAAAGCAGUGAGCCGCUGUGAGCACCAGGCGAUUGCUUAUCAAGGUGCCGCCACAGAACCAUUUUAUUUCAU
(((((........-------------.(((((((((.........)))))))))...(((((.(((((((((....)))).....)))))...)))))..........))))). ( -26.20)
>DroPse_CAF1 10502 111 - 1
UGUAAAGUUUGGACCUUCC---UGAUACCUACAACUCGGAGUAGAAGCAAUGGGCUGCUGUGAGCACCAGUCUGUUGCUUAUCAAGGUGCCGCCACAGAACCAAUUCGUUUUGU
..........((((((...---((((..((((........))))(((((((((((((.((....)).))))))))))))))))))))).))...(((((((......))))))) ( -34.90)
>DroSim_CAF1 10327 94 - 1
UGA-------AGA-------------ACUUACUGUUCGGAAAAGAAGCAGUGAGCCGCUGUGAGCACCAGGCGAUUGCUUAUCAAGGUGCCGCCACAGAACCACUUUAUUUCAU
(((-------((.-------------.((((((((((......).)))))))))...(((((.(((((((((....)))).....)))))...))))).....)))))...... ( -27.80)
>DroEre_CAF1 10506 114 - 1
UGGAAAUUUCAGAACAAGAAGUGCACACUUACUGUUCGGAAUAAAAGCAGUGAGCCGCUGUGAGCACUAGGCGAUUGCUUAUCAGGGUGCCGCCACAGAACCAUUUGGUUUCAU
(((..(((((.(((((..((((....))))..))))))))))..(((((((..(((...((....))..))).)))))))............)))..(((((....)))))... ( -30.00)
>DroYak_CAF1 10743 114 - 1
UGGAAAUUUAAGAACUAGAAUGGCACACUUACUGUUCGGAAUAAAAGCAGUGAGCCGCUGUGAGCACCAGGCGAUUGCUUAUCAGGGUGCCGCCACAGAACCAUUUGAUUUCAU
...........(((...((((((....(((((((((.........)))))))))...(((((.(((((((((....)))).....)))))...)))))..))))))...))).. ( -31.70)
>DroPer_CAF1 10615 111 - 1
UGAAAAGCUUGGACCUUCC---UGAUACCUACAACUCGGAGUAGAAGCAAUGGGCUGCUGUGAGCACCAGUCUGUUGCUUAUCAAGGUGCCGCCACAGAACCAAUUCGUUUUGU
..........((((((...---((((..((((........))))(((((((((((((.((....)).))))))))))))))))))))).))...(((((((......))))))) ( -34.90)
>consensus
UGAAAAGUUAAGA_CU________A_ACUUACUGUUCGGAAUAAAAGCAGUGAGCCGCUGUGAGCACCAGGCGAUUGCUUAUCAAGGUGCCGCCACAGAACCAUUUCAUUUCAU
(((((......................(((((((((.........)))))))))...(((((.(((((((((....)))).....)))))...)))))..........))))). (-19.93 = -20.35 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:32:32 2006