Locus 9350

Sequence ID 3R_DroMel_CAF1
Location 24,857,327 – 24,857,447
Length 120
Max. P 0.786090
window14962

overview

Window 2

Location 24,857,327 – 24,857,447
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 78.67
Mean single sequence MFE -34.50
Consensus MFE -23.58
Energy contribution -23.82
Covariance contribution 0.23
Combinations/Pair 1.50
Mean z-score -1.49
Structure conservation index 0.68
SVM decision value 0.57
SVM RNA-class probability 0.786090
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24857327 120 + 27905053
UAAUAUCUCCUCAGCCGCAUGGCCGUUGUUUCGGCAAGGAUAAUGAAAUCCUCACUGGGACUUAAGGCCAAGCCGUUGGCAAAGGACAACUCAUCGAGCAGUACCUCGUUUGUCUUCUUU
..........(((((.((.(((((...((..(((..(((((......)))))..)))..))....))))).)).)))))...(((((((.....((((......)))).))))))).... ( -40.10)
>DroPse_CAF1 3814 120 + 1
UAAAACUUGGUCAGGCGCAUGGCCGCUGUCUCGGCCACGACAAUAAAGUCCUCAUCAGGGCUCAGGGCCACACCAUUCGCCAAAAAUAGCCCAUCCAAAAGAACCUCGAUUACAUUGUUG
.......(((((((((((......)).)))).)))))(((((((..((((.......(((((...(((..........)))......))))).((.....)).....))))..))))))) ( -29.70)
>DroSim_CAF1 4286 120 + 1
UAGUAUUUUCUCAGCCGCAUGGCCGUUGUUUCGGCAAGGACAAUGAAAUCCUCGCUGGGACUUAAGGCCAAGCCGUUGGCAAAGGACAACUCAUCGAGCAGUACCUCGUUUGUCUUCUUU
..........(((((.((.(((((...((..((((.((((........)))).))))..))....))))).)).)))))...(((((((.....((((......)))).))))))).... ( -42.10)
>DroEre_CAF1 4321 120 + 1
UAAUAUUUCCUCAACCGCAUGGCCGUUGUUUCGGCAAGGAUAAUGAAAUCCUCACUGGGACUUAAGGCCAAGCCGUUGGCAAAGGACAACUCGUCGAGCAGUACCUCGUUUGUCUUCUUU
..........(((((.((.(((((...((..(((..(((((......)))))..)))..))....))))).)).)))))...(((((((.....((((......)))).))))))).... ( -40.10)
>DroYak_CAF1 4180 120 + 1
UAGUAUUUUCUUAGCCGCAUGGCCGUUGUUUCGGCAAGAAUAAUGAAAUCCUCACUGGGACUUAAGGCCAAGCCGUUGGCAAAGGACAACUCGUCCAUCAGUACCUCGUUUGUCUUCUUU
..(((((......(((((.(((((...((..(((..((.((......)).))..)))..))....))))).))....)))...((((.....))))...)))))................ ( -31.00)
>DroAna_CAF1 3870 120 + 1
UAAUACUUCAACAAUCGCAUGGCUGCCGUUUCGACCACGACAACAAAAUCUUCAUUCGGGCUUAAAGCUACUCCGUUGGCAAAGGCAAGUCCGUCCAAGAGUACUUCGUUGGUCCGCCUU
................((((((...))))...((((((((........((((....(((((((...((((......))))......)))))))...)))).....))).))))).))... ( -24.02)
>consensus
UAAUAUUUCCUCAGCCGCAUGGCCGUUGUUUCGGCAAGGACAAUGAAAUCCUCACUGGGACUUAAGGCCAAGCCGUUGGCAAAGGACAACUCAUCCAGCAGUACCUCGUUUGUCUUCUUU
...........((((.((.(((((...(((((((..(((((......)))))..)))))))....))))).)).))))....(((((((....................))))))).... (-23.58 = -23.82 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:32:23 2006