| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,847,938 – 24,848,046 |
| Length | 108 |
| Max. P | 0.552654 |
| Location | 24,847,938 – 24,848,046 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 81.13 |
| Mean single sequence MFE | -23.62 |
| Consensus MFE | -15.70 |
| Energy contribution | -17.02 |
| Covariance contribution | 1.32 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.552654 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24847938 108 - 27905053 AGAAAUCAGAUUUUCAAGGUAUUGACUCAAAAAGGUAACACUCAGUUGUCUGGGUAAAUGUUGCCCUAUUUGCUCAUUGCAAACUGU----CCGCCUACAAAUCGUAACUUU ........(((((...((((...(((.......((((((((((((....))))))....))))))...(((((.....)))))..))----).))))..)))))........ ( -25.90) >DroSec_CAF1 63536 112 - 1 AGAAAUUCGAUUUUCAAGGUAUUGACUCAAAAAGGUAACACUCAGUUGUCUGGGUAAAUGUUGCCCUAUUUGCUCAUUGCAAACUGUCCGUCCGCCUACAAAUCGUAACUUU .......((((((...((((...(((.......((((((((((((....))))))....))))))...(((((.....)))))......))).))))..))))))....... ( -27.40) >DroSim_CAF1 67180 108 - 1 AGAAAUUCGAUUUUCAAGGUAUUGACUCAAAAAGGUAACACUCAGUUGUCUGGGUAAAUGUUGCCCUAUUUGCUCAUUGCAAACUAU----CCGCCUACGAAUCGUAACUUU .......((((((...((((.............((((((((((((....))))))....))))))...(((((.....)))))....----..))))..))))))....... ( -25.60) >DroEre_CAF1 61881 91 - 1 AGAAAUCCGAUAUCCAAGGUAUUGAUUCAAAAAGGUUACACUCAGUUGUCUGGGUAAAGGUUGCCCUAUUUGCUCAGUGCAAACCCU----UUAU----------------- .(((...((((((.....)))))).))).(((.((((.((((.(((.....(((((.....))))).....))).))))..)))).)----))..----------------- ( -21.40) >DroYak_CAF1 59958 93 - 1 AGAAAUUCGAUUUUCAAGGUAUUGACUCAAAAUGGUAGCACUCUGUUGUCUGCGUAAAUAUUGCCCUAUUUGCUCAAUGCAAACUAU----CCGCCC--------------- .((((......))))...(((((((.........((((.((......))))))(((((((......)))))))))))))).......----......--------------- ( -17.80) >consensus AGAAAUUCGAUUUUCAAGGUAUUGACUCAAAAAGGUAACACUCAGUUGUCUGGGUAAAUGUUGCCCUAUUUGCUCAUUGCAAACUAU____CCGCCUAC_AAUCGUAACUUU .((((......)))).((((.............((((((((((((....))))))....))))))...(((((.....)))))..........))))............... (-15.70 = -17.02 + 1.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:32:22 2006