Locus 9348

Sequence ID 3R_DroMel_CAF1
Location 24,841,946 – 24,842,038
Length 92
Max. P 0.999327
window14960

overview

Window 0

Location 24,841,946 – 24,842,038
Length 92
Sequences 5
Columns 92
Reading direction forward
Mean pairwise identity 97.39
Mean single sequence MFE -24.52
Consensus MFE -22.24
Energy contribution -22.44
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -2.67
Structure conservation index 0.91
SVM decision value 3.51
SVM RNA-class probability 0.999327
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24841946 92 + 27905053
GCUCAAGGCGGUCAGGUGCAUUUAUCGCAAUUAAACACUUGUUGCUGCCAAAGCAAAGCAAAAGCACUAAGCAAAAAGGCAAAAGCAAAGCU
(((...((((((((((((..((((.......))))))))))..))))))...((...((....)).....((......))....))..))). ( -22.50)
>DroSec_CAF1 57704 92 + 1
GCUCAAGGCGGUCAGGUGCAUUUAUCGCAAUUAAACACUUGUUGCUGCCAAAGCAAAGCAAAAGCACUGAGCAAAAAGGCAAAAGCAAAGCU
(((((.((((((((((((..((((.......))))))))))..))))))........((....))..)))))......((....))...... ( -25.10)
>DroSim_CAF1 61236 92 + 1
GCUCAAGGCGGUCAGGUGCAUUUAUCGCAAUUAAACACUUGUUGCUGCCAAAGCAAAGCAAAAGCACUGAGCAAAAAGGCAAAAGCAAAGCU
(((((.((((((((((((..((((.......))))))))))..))))))........((....))..)))))......((....))...... ( -25.10)
>DroEre_CAF1 55958 92 + 1
GCUCAAGGCGGUCAGGUGCAUUUAUCGCAAUUAAACACUUGUUGCUGCCAAAGCAAAGCAAAAGCAGUGAGCAAAAAGCCAAAAGCAAAGCU
(((((.((((((((((((..((((.......))))))))))..))))))........((....))..))))).....((.....))...... ( -24.90)
>DroYak_CAF1 54117 92 + 1
GCUCAAGGCGGUCAGGUGCAUUUAUCGCAAUUAAACACUUGUUGCUGCCAAAGCAAAGCAAAAGCAGCGAGCAAAAAGCCAAAAGCAAAGUU
((((..((((((((((((..((((.......))))))))))..))))))...((...((....)).)))))).....((.....))...... ( -25.00)
>consensus
GCUCAAGGCGGUCAGGUGCAUUUAUCGCAAUUAAACACUUGUUGCUGCCAAAGCAAAGCAAAAGCACUGAGCAAAAAGGCAAAAGCAAAGCU
((((..((((((((((((..((((.......))))))))))..))))))........((....))...)))).................... (-22.24 = -22.44 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:32:21 2006