| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,832,033 – 24,832,133 |
| Length | 100 |
| Max. P | 0.513057 |
| Location | 24,832,033 – 24,832,133 |
|---|---|
| Length | 100 |
| Sequences | 3 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 75.54 |
| Mean single sequence MFE | -15.74 |
| Consensus MFE | -10.53 |
| Energy contribution | -10.20 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.67 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.513057 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24832033 100 - 27905053 UUUACCAAACGUGGUUAAAACAUGCCCUGUGCUUGAAGUGAGAAGAAAACAAACAUCAUAAUUGGUGGAAAGUUGGUAUACACUGAAAUAAAACUACGCU .........(((((((....((.((.....)).)).((((.......(((...(((((....)))))....)))......)))).......))))))).. ( -16.92) >DroSec_CAF1 47817 78 - 1 UUUACCAAACGUGGUUAAAUAGU-------GGUUA---------------AAACAUUGAAAUUGGUAGAAAGUGGCUAUACACUGAAAUAAAACUACGCU .........(((((((...((((-------(....---------------...)))))............((((......)))).......))))))).. ( -13.70) >DroSim_CAF1 51349 78 - 1 UUUACCAAACGUGGUUAAAACGU-------GGUUA---------------AAACACCAAAAUUGGUAGAAAGUGGCUAUACACUGAAAUAAAACUACGCU ((((((((((((.......))))-------(((..---------------....)))....)))))))).((((......))))................ ( -16.60) >consensus UUUACCAAACGUGGUUAAAACGU_______GGUUA_______________AAACAUCAAAAUUGGUAGAAAGUGGCUAUACACUGAAAUAAAACUACGCU .........(((((((......................................((((....))))....((((......)))).......))))))).. (-10.53 = -10.20 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:32:19 2006