| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,814,975 – 24,815,089 |
| Length | 114 |
| Max. P | 0.583551 |
| Location | 24,814,975 – 24,815,089 |
|---|---|
| Length | 114 |
| Sequences | 4 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 86.78 |
| Mean single sequence MFE | -28.38 |
| Consensus MFE | -19.50 |
| Energy contribution | -19.75 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.583551 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24814975 114 + 27905053 UCUGGACACAUUUGUCAUUUCGCAAAACGUUUUCGAACAGCUUAAGCCUGAUUGCGGGC-CAUCAUGGCAGUUGUUCAAAAUUACUCCGGAAUCCAGACUACUGGCUCCGGAUUC ....((((....))))............(((((.((((((((...(((((((.(....)-.)))).))))))))))))))))...((((((..((((....)))).))))))... ( -34.70) >DroSim_CAF1 33267 114 + 1 CCUUGACACAUUUGUCAUUUCGCAAAACGUUUUCGAACAGCUUAAGCCUGAUUGCGGGC-CAUCAUGGCAGUUGUUCAAAAUCACUCCGGAAUCCAGACUACUGGCUCCGGAUUC ...(((((....)))))...........(((((.((((((((...(((((((.(....)-.)))).))))))))))))))))...((((((..((((....)))).))))))... ( -35.40) >DroEre_CAF1 25893 101 + 1 CCUGGACACAUUUGUCAUUUCGCAAAACGUUUUCGAACAGCUUAAGUCUGAUUGUGGGCCCAUCAUGGCAGUUGUUCAAAAUCACUACGA--------------ACUCCGGAUUC .(((((....(((((......)))))..(((((.((((((((...(((((((.(.....).)))).))))))))))))))))........--------------..))))).... ( -21.40) >DroYak_CAF1 26639 100 + 1 CCUUGACACAUUUGUCAUUUCGCAAAACGUUUUCGAACAGCUUAAGUCUGAUUGUGGGC-CAUCAUGGCAGUUGUUCAAAAUCACUACGA--------------ACUCCGGAUUC ((.(((((....))))).((((......(((((.((((((((...(((((((.(....)-.)))).)))))))))))))))).....)))--------------)....)).... ( -22.00) >consensus CCUGGACACAUUUGUCAUUUCGCAAAACGUUUUCGAACAGCUUAAGCCUGAUUGCGGGC_CAUCAUGGCAGUUGUUCAAAAUCACUACGA______________ACUCCGGAUUC .(((((....(((((......)))))..(((((.((((((((...(((((((.........)))).))))))))))))))))........................))))).... (-19.50 = -19.75 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:32:13 2006