Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,119,769 – 3,119,874 |
Length | 105 |
Max. P | 0.656837 |
Location | 3,119,769 – 3,119,874 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 81.74 |
Mean single sequence MFE | -18.50 |
Consensus MFE | -11.53 |
Energy contribution | -11.34 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.17 |
Mean z-score | -1.88 |
Structure conservation index | 0.62 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.656837 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3119769 105 - 27905053 GACAAUGCGCUCCGGUCCCAUACUCCCACGGAGUGUCACACUGGAAACAAAUUCAUUUCCCAAUUAAAAUUUU---------AUGCCAGGUCCUUAUAAACUAAUAAGCAAACA (((...((((((((..............))))))))....((((....(((((..............))))).---------...)))))))(((((......)))))...... ( -20.18) >DroSec_CAF1 7404 105 - 1 GACAAUGCACUCCGGUCCCAUACUCCCACGGAGUGUCACACUGAAAACAAAUGCAUAUCCCCAUUUAAAUUUA---------AUGCCAUGUCCUUAUACACUAAUAAACAAAUA ((((..((((((((..............))))))))..((.((((...(((((........)))))...))))---------.))...))))...................... ( -17.04) >DroSim_CAF1 12676 105 - 1 GACAAUGCACUCCGGUCCCAUACUCCCACGGAGUGUCACACUGAAAACAAAUGCAUUACCCAAUUUAAAUUUA---------AUGCCAGGUCCUUAUACACUAAUAAACAAAUA (((...((((((((..............))))))))....(((.........((((((.............))---------))))))))))...................... ( -18.26) >DroYak_CAF1 10912 110 - 1 GACAGUCCGCUCCGUUCCCAUACUCCCACGGAGUAUCGCACAGAAAGGAAA----UUUCCCAUUUUGAAUUUAAUAACCUUCAUGCCAGGUCCUUACAAGCUGAUAUUCAAAUA ..((((..(((((((............)))))))......(((((.((...----....)).)))))....(((..((((.......))))..)))...))))........... ( -18.50) >consensus GACAAUGCACUCCGGUCCCAUACUCCCACGGAGUGUCACACUGAAAACAAAUGCAUUUCCCAAUUUAAAUUUA_________AUGCCAGGUCCUUAUAAACUAAUAAACAAAUA (((....(((((((..............)))))))((.....)).............................................)))...................... (-11.53 = -11.34 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:52 2006