| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,806,845 – 24,806,941 |
| Length | 96 |
| Max. P | 0.669949 |
| Location | 24,806,845 – 24,806,941 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 81.99 |
| Mean single sequence MFE | -31.93 |
| Consensus MFE | -15.68 |
| Energy contribution | -15.32 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.87 |
| Structure conservation index | 0.49 |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.669949 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24806845 96 + 27905053 -------CAGCUUAUUGGCCUUGGCUCCUUCGAUUGCGGCUAUCAAAUCAUCGGUACAACGUCAUUAACAUGC-CG--CCAAUGAAGCAGUCAAGCCGAAAGCUGA------ -------((((((.(((((.((((((.(((((...(((((...........((......))..........))-))--)...))))).))))))))))))))))).------ ( -38.10) >DroPse_CAF1 19356 91 + 1 --U--UCUGGCUUAUUG------GCUUCUCCGACUGCGGCUAUCAAAUCAGCGGUACAACGUCAUUAACAUGU-UGGCCCAAUGAAGCAGUCAAGCUGAAAG---------- --(--((.(((((...(------(.....))((((((.(((........)))((..((((((.......))))-))..))......))))))))))))))..---------- ( -27.20) >DroEre_CAF1 17887 96 + 1 -------CGGCUUAUUGGCCCUGGCUCCUUCGAUUGCGGCUAUCAAAUCAUCGGUACAACGUCAUUAACAUGC-CG--CCAAUGAAGCAGUCAAGCCGAAAGCUGA------ -------((((((.(((((..(((((.(((((...(((((...........((......))..........))-))--)...))))).))))).))))))))))).------ ( -35.70) >DroYak_CAF1 18245 102 + 1 -------CGGCUUAUUGGCCCUUGCUCCUUCGAUUGCGGCUAUCAAAUCAUCGGUACAACGUCAUUAACAUGC-CG--CCAAUGAAGCAGUCAAGCCGAAAGCUGAAAGCCG -------((((((.(((((..(((((.(((((...(((((...........((......))..........))-))--)...))))).)).))))))))))))))....... ( -31.40) >DroAna_CAF1 16897 98 + 1 CAGGACCCGGCUUAUUG------GCUGCUUCGAAUGCGGCUAUCAAAUCAUCGGUACAACGCCAUUAACAUGCCCG--CCAAUGAAGCAGUCAAGCCGAAAGCUAA------ .......(((((...((------(((((((((...((((.(((........((......))........))).)))--)...))))))))))))))))........------ ( -31.99) >DroPer_CAF1 19560 91 + 1 --U--UCUGGCUUAUUG------GCUUCUCCGACUGCGGCUAUCAAAUCAGCGGUACAACGUCAUUAACAUGU-UGGCCCAAUGAAGCAGUCAAGCUGAAAG---------- --(--((.(((((...(------(.....))((((((.(((........)))((..((((((.......))))-))..))......))))))))))))))..---------- ( -27.20) >consensus _______CGGCUUAUUG______GCUCCUUCGAUUGCGGCUAUCAAAUCAUCGGUACAACGUCAUUAACAUGC_CG__CCAAUGAAGCAGUCAAGCCGAAAGCUGA______ .......((((((..........(......)(((((((((((((........))))....))).....(((..........)))..)))))))))))).............. (-15.68 = -15.32 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:32:07 2006