| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,805,399 – 24,805,498 |
| Length | 99 |
| Max. P | 0.726336 |
| Location | 24,805,399 – 24,805,498 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 76.85 |
| Mean single sequence MFE | -10.44 |
| Consensus MFE | -7.00 |
| Energy contribution | -7.17 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.30 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.726336 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24805399 99 + 27905053 AUUUAAUGAAAAAAGUUUCAUAAAUAUGGCAAUGAAUUUAAUUAAGGCCAACAACAACGCCAGCCAGCCAUCUCACAACACAACAGCCAAAAACACAGG--------- (((((.(((((....))))))))))((((((((.......)))..(((..........))).....)))))............................--------- ( -10.70) >DroPse_CAF1 17856 87 + 1 AUUUAAUGAAAAAAGUUUCAUAAAUAUGGCAAUGAAUUUAAUUAAAGCCAACAACCACAUC-GCC----AAAAAGGAAAACAACAAC------UACCA---------- (((((.(((((....)))))))))).((((.(((.......................))).-)))----).................------.....---------- ( -7.90) >DroSec_CAF1 21645 87 + 1 AUUUAAUGAAAAAAGUUUCAUAAAUAUGGCAAUGAAUUUAAUUAAGGCCAACAACAAC-----------AGCUCACAACACAACAGCCAAAAACACAG---------- (((((.(((((....)))))))))).((((..(((......)))..))))........-----------.............................---------- ( -8.30) >DroSim_CAF1 22060 98 + 1 AUUUAAUGAAAAAAGUUUCAUAAAUAUGGCAAUGAAUUUAAUUAAGGCCAACAACAACGUCAGCCAGCCAGCUCACAACACAACAGCCAAAAACACAG---------- (((((.(((((....)))))))))).((((...............(((..((......))..)))((....))............)))).........---------- ( -13.60) >DroAna_CAF1 15425 106 + 1 AUUUAAUGAAAAAAGUUUCAUAAAUAUGGCAAUGAAUUUAAUUAAGGCCAACAUCGGCAGAAGC--AUCAGUUCAAAACAUAACAGCAAGAGCCACAGGACCUAAACA (((((.(((((....)))))))))).((((..((((((........(((......)))......--...))))))........(.....).))))............. ( -14.23) >DroPer_CAF1 18043 87 + 1 AUUUAAUGAAAAAAGUUUCAUAAAUAUGGCAAUGAAUUUAAUUAAAACCAACAACCACAUC-GCC----AAAAAGGAAAACAACAAC------UACCA---------- (((((.(((((....)))))))))).((((.(((.......................))).-)))----).................------.....---------- ( -7.90) >consensus AUUUAAUGAAAAAAGUUUCAUAAAUAUGGCAAUGAAUUUAAUUAAGGCCAACAACAACAUC_GCC____AGCUCACAACACAACAGCCAAAAACACAG__________ (((((.(((((....)))))))))).((((..(((......)))..)))).......................................................... ( -7.00 = -7.17 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:32:06 2006