| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,799,222 – 24,799,314 |
| Length | 92 |
| Max. P | 0.925216 |
| Location | 24,799,222 – 24,799,314 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 80.37 |
| Mean single sequence MFE | -28.73 |
| Consensus MFE | -18.57 |
| Energy contribution | -19.16 |
| Covariance contribution | 0.59 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.52 |
| Structure conservation index | 0.65 |
| SVM decision value | 1.17 |
| SVM RNA-class probability | 0.925216 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24799222 92 - 27905053 CCAGGUGCAGUUGCAGUUGCACUUUCAGUUGCAAUUGCUGUUGCAGUUGCAGUUGGAGCU-----ACAACCGCAG---UCAAAGGGCUCAAAGGACAAAA ((((((((((......)))))))).((..(((((((((....)))))))))..))(((((-----...((....)---).....)))))...))...... ( -31.00) >DroSec_CAF1 15494 86 - 1 CCAGGUGCAGUUGCAGUUGCACUUUCAGUUGCAAUU------GCAGUUGCAGUUGGAGCU-----ACAACCGCAG---UCAAAGGGUUCAAAGGACAAAA ((((.((((..((((((((((........)))))))------)))..)))).))))....-----....((....---.....))(((.....))).... ( -30.10) >DroSim_CAF1 15852 86 - 1 CCAGGUGCAGUUGCAGUUGCACUUUCAGUUGCAAUU------GCAGUUGCAGUUGGAGCU-----ACAACCGCAG---UCAAAGGGUUCAAAGGACAAAA ((((.((((..((((((((((........)))))))------)))..)))).))))....-----....((....---.....))(((.....))).... ( -30.10) >DroEre_CAF1 10175 94 - 1 CCAGGUGCAGUUGCAGUUGCACUUUCAGUUGCAAUU------GCAGUUGCAACUGAAGCUAACACACAACCACAGGGUUCAAAGGGCUCAAAGGACAAAA .(((.((((..((((((((((........)))))))------)))..)))).))).((((.......((((....)))).....))))............ ( -30.60) >DroYak_CAF1 10495 86 - 1 CCAGGUGCAGUUGCAGUUGCACUUUCAGUUGCAAUU------GCAGUUGCAGCUGGAGCU-----ACAGCCGCAG---UCAAAGGGCUCAAAGGACAAAA ((((.((((..((((((((((........)))))))------)))..)))).))))....-----...(((..((---((....))))....)).).... ( -34.10) >DroAna_CAF1 8926 82 - 1 CCAGGUGCAGCAGUCGUUGCAGUUACAGUUAUAGCC------AUAGUCAAA----GAGCC-----AGGAUCAGAG---AGGACCAGUUCAAAGGACAAAG ..((.((((((....)))))).))............------...(((...----((((.-----.((.((....---..)))).))))....))).... ( -16.50) >consensus CCAGGUGCAGUUGCAGUUGCACUUUCAGUUGCAAUU______GCAGUUGCAGUUGGAGCU_____ACAACCGCAG___UCAAAGGGCUCAAAGGACAAAA ((((((((((......)))))))).(((((((((((........)))))))))))(((((........................)))))...))...... (-18.57 = -19.16 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:31:59 2006