Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 24,798,055 – 24,798,153 |
Length | 98 |
Max. P | 0.698433 |
Location | 24,798,055 – 24,798,153 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 81.99 |
Mean single sequence MFE | -18.75 |
Consensus MFE | -12.16 |
Energy contribution | -12.02 |
Covariance contribution | -0.14 |
Combinations/Pair | 1.06 |
Mean z-score | -2.02 |
Structure conservation index | 0.65 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.698433 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24798055 98 + 27905053 AAUAUCCGGUUUUCAACCGCAAACUGCACUUUUCUACCCAUUGUGCCUGGCUCCAUUCGUUAUCCUGCCACUGCUCCUGCUGAGUGGCCCCAUCCCAA ......((((.....))))......((((.............)))).(((..((((((((......))....((....)).))))))..)))...... ( -18.52) >DroPse_CAF1 9091 76 + 1 AAUAUCCGGUUUUCAACCGCAUAUUGCACUUUUCUACCCAUUGUGC--AGCCCCAUUCGUUAUCC------------UGCUGAGUGGCU--------A (((((.((((.....)))).)))))((((.............))))--....((((((((.....------------.)).))))))..--------. ( -17.72) >DroSec_CAF1 14336 98 + 1 AAUAUCCGGUUUUCAACCGCAAACUGCACUUUUCUACCCAUUGUGCCUGGCUCCAUUCGUUAUCCUGCCACUGCUUCUGCUGAGUGGCCCCAUCCCAA ......((((.....))))......((((.............)))).(((..((((((((......))....((....)).))))))..)))...... ( -18.52) >DroSim_CAF1 14696 98 + 1 AAUAUCCGGUUUUCAACCGCAAACUGCACUUUUCUACCCAUUGUGCCUGGCUCCAUUCGUUAUCCUGCCACUGCUCCUGCUGAGUGGCACCAUCCCAA .......(((........((.....((((.............))))...))...............((((((((....))..)))))))))....... ( -19.72) >DroAna_CAF1 7712 82 + 1 AAUAUCCGGUUUUCAACCGCAAACUGCACUUUUCUACCCAUUGUGC--AGUACCAUUCGUUAUCC------------UGCUGAGUGGCUU--ACACAA ......((((.....))))...(((((((.............))))--))).((((((((.....------------.)).))))))...--...... ( -20.32) >DroPer_CAF1 9272 76 + 1 AAUAUCCGGUUUUCAACCGCAUAUUGCACUUUUCUACCCAUUGUGC--AGCCCCAUUCGUUAUCC------------UGCUGAGUGGCU--------A (((((.((((.....)))).)))))((((.............))))--....((((((((.....------------.)).))))))..--------. ( -17.72) >consensus AAUAUCCGGUUUUCAACCGCAAACUGCACUUUUCUACCCAUUGUGC__AGCUCCAUUCGUUAUCC____________UGCUGAGUGGCUC__UCCCAA .......(((.....)))((.....((((.............))))...)).((((((((..................)).))))))........... (-12.16 = -12.02 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:31:59 2006