Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 24,793,739 – 24,793,846 |
Length | 107 |
Max. P | 0.879240 |
Location | 24,793,739 – 24,793,846 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 86.19 |
Mean single sequence MFE | -47.86 |
Consensus MFE | -33.64 |
Energy contribution | -34.24 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.18 |
Mean z-score | -2.37 |
Structure conservation index | 0.70 |
SVM decision value | 0.91 |
SVM RNA-class probability | 0.879240 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24793739 107 + 27905053 A-AGGGGCCGGAGGCCUCAGGUCCUGAGUCCUGGAUCCUG-------AAUCCUGGGCAUUGGCAUGGAUCUGAGACGGGACUUUGGCCUCCAUUCUCUACGUCC-CUGCUCCUCCU- .-((((((.(((((((..(((((((..(((..((((((..-------...((........))...))))))..)))))))))).))))))).........))))-)).........- ( -45.00) >DroSec_CAF1 10035 114 + 1 A-CGGGGCCGGAGGCCUCAGGUCCUGAGUCCUGGAUCCUGAAUCCUGAAUCCUGGGCAUUGGCAUGGAUCUGAGACGGGACUUUGGCCCCCAUCCUCCACGCCC-CUGCUGCGCCA- .-.(((((.(((((.(((((((((((.((((.((((.(........).)))).)))).....)).)))))))))..(((.........)))..)))))..))))-)..........- ( -48.50) >DroSim_CAF1 10078 114 + 1 A-CGGGGCCGGAGGCCUCAGGUCCUGAGUCCUGGAUCCUGAAUCCUGAAUCCUGGGCAUUGGCAUGGAUCUGAGACGGGACUUUGGCCCCCAUCCUCCACGCCC-CUGCUCCGCCA- .-((((((.((.((((((((((((((.((((.((((.(........).)))).)))).....)).)))))))))...(((...(((...)))...)))..))))-).))))))...- ( -48.80) >DroEre_CAF1 4778 114 + 1 A-AGGGGCCGGAGGCCUCAGGUCCUGAGUCCUGAGUCCGGAAUCCUGGAUCCUGGGCAUUGGCAUGGAUCUGAGACGGGACUUAUG-CCCCAUCCUCCACUUCCUCUGCUCCUCCA- .-((((((.(((((.(((((((((((.((((.(..(((((....)))))..).)))).....)).)))))))))..(((.(....)-.)))...........)))))))))))...- ( -49.10) >DroYak_CAF1 4942 113 + 1 AAAGGGGCCGGAGGCCUCAGAUCCUGAAUCCAGAAUCCAGAGUCCUGGAUCCUGGGCAUUGGCAUGGAUCUGAGACGGGACUU--U-CCCCAUCCCCGACUUCC-CUGCACCACCAG ..(((((.(((.((.(((((((((.....((((.((((((....)))))).))))((....))..)))))))))..(((....--.-.)))..)))))...)))-)).......... ( -47.90) >consensus A_AGGGGCCGGAGGCCUCAGGUCCUGAGUCCUGGAUCCUGAAUCCUGAAUCCUGGGCAUUGGCAUGGAUCUGAGACGGGACUUUGGCCCCCAUCCUCCACGUCC_CUGCUCCGCCA_ ...(((((.(((((.(((((((((((.((((.((((.(........).)))).)))).....)).)))))))))..(((.........)))..)))))..)))).)........... (-33.64 = -34.24 + 0.60)
Location | 24,793,739 – 24,793,846 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 86.19 |
Mean single sequence MFE | -50.42 |
Consensus MFE | -34.30 |
Energy contribution | -34.86 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.12 |
Mean z-score | -2.45 |
Structure conservation index | 0.68 |
SVM decision value | 0.80 |
SVM RNA-class probability | 0.854823 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24793739 107 - 27905053 -AGGAGGAGCAG-GGACGUAGAGAAUGGAGGCCAAAGUCCCGUCUCAGAUCCAUGCCAAUGCCCAGGAUU-------CAGGAUCCAGGACUCAGGACCUGAGGCCUCCGGCCCCU-U -..((((.((..-...(.....)..((((((((..(((((.((((..(((((...((........))...-------..)))))..))))...))).))..)))))))))).)))-) ( -38.70) >DroSec_CAF1 10035 114 - 1 -UGGCGCAGCAG-GGGCGUGGAGGAUGGGGGCCAAAGUCCCGUCUCAGAUCCAUGCCAAUGCCCAGGAUUCAGGAUUCAGGAUCCAGGACUCAGGACCUGAGGCCUCCGGCCCCG-U -..........(-((((.(((((....(((((....)))))(((((((.(((..((....))((.((((((........)))))).)).....))).))))))))))))))))).-. ( -51.60) >DroSim_CAF1 10078 114 - 1 -UGGCGGAGCAG-GGGCGUGGAGGAUGGGGGCCAAAGUCCCGUCUCAGAUCCAUGCCAAUGCCCAGGAUUCAGGAUUCAGGAUCCAGGACUCAGGACCUGAGGCCUCCGGCCCCG-U -.(((((.(((.-.((((((((((((((((.......))))))))....))))))))..))))).(((....((.((((((.(((........))))))))).))))).)))...-. ( -53.80) >DroEre_CAF1 4778 114 - 1 -UGGAGGAGCAGAGGAAGUGGAGGAUGGGG-CAUAAGUCCCGUCUCAGAUCCAUGCCAAUGCCCAGGAUCCAGGAUUCCGGACUCAGGACUCAGGACCUGAGGCCUCCGGCCCCU-U -..((((.((...(((.(((((((((((((-(....)))))))))....)))))......(((((((.(((..((.(((.......))).)).))))))).))).))).)).)))-) ( -49.30) >DroYak_CAF1 4942 113 - 1 CUGGUGGUGCAG-GGAAGUCGGGGAUGGGG-A--AAGUCCCGUCUCAGAUCCAUGCCAAUGCCCAGGAUCCAGGACUCUGGAUUCUGGAUUCAGGAUCUGAGGCCUCCGGCCCCUUU ..........((-((..(((((((...(((-.--....)))(((((((((((..((....))(((((((((((....))))))))))).....)))))))))))))))))))))).. ( -58.70) >consensus _UGGAGGAGCAG_GGACGUGGAGGAUGGGGGCCAAAGUCCCGUCUCAGAUCCAUGCCAAUGCCCAGGAUUCAGGAUUCAGGAUCCAGGACUCAGGACCUGAGGCCUCCGGCCCCU_U ....(((.((...(((...........(((((....)))))(((((((.(((..((....))((.((((((........)))))).)).....))).))))))).))).)).))).. (-34.30 = -34.86 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:31:55 2006