| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,786,030 – 24,786,147 |
| Length | 117 |
| Max. P | 0.955073 |
| Location | 24,786,030 – 24,786,147 |
|---|---|
| Length | 117 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 89.01 |
| Mean single sequence MFE | -30.74 |
| Consensus MFE | -26.77 |
| Energy contribution | -26.33 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.84 |
| Structure conservation index | 0.87 |
| SVM decision value | 1.45 |
| SVM RNA-class probability | 0.955073 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24786030 117 + 27905053 CGACUUAAGGAAAAAGCU--GUCGGCUUAGGCUUGUCAGGCAAAUAAGCUCAUACUUUUAAAGUUAAAAUAAGAGGCUUAUUUAAAAAAAAAGACUUGCAAGAUAAGUCAGCUGUCAAA- .................(--(.(((((..((((((((..(((((((((((.....(((((....))))).....)))))))..............))))..))))))))))))).))..- ( -26.23) >DroEre_CAF1 26207 115 + 1 CGAUUUAAGGGAAAAGCU--GUCAGCUCAGGCUUGUCAGGCAAAUAAGCUCAUACUUUUAAAGUUAGCAUAAGAGGCUUAUUUAAA---AAAGACUUGCAAGAUAAGCCAGCUGUCAGAU ................((--(.(((((..((((((((..((((((((((.....((((((.........)))))))))))).....---......))))..))))))))))))).))).. ( -32.10) >DroYak_CAF1 18072 117 + 1 CAAUUCAAGGCAAAAGCUGUGUCAGCUUAGGCUUGUCAGGCAAAUAAGCUCAUACUUUUAAAGUUAACAUAAGAGGCUUAUUUAAA---AAGGACUUGCCAGAUAAGCCAGCUGUCGGAU ..((((..(((..((((((...)))))).((((((((.(((((((((((.....((((((.........)))))))))))).....---......))))).)))))))).)))...)))) ( -33.90) >consensus CGAUUUAAGGAAAAAGCU__GUCAGCUUAGGCUUGUCAGGCAAAUAAGCUCAUACUUUUAAAGUUAACAUAAGAGGCUUAUUUAAA___AAAGACUUGCAAGAUAAGCCAGCUGUCAGAU ....................(.(((((..((((((((..((((((((((.....((((((.........))))))))))))..............))))..))))))))))))).).... (-26.77 = -26.33 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:31:39 2006