Locus 9321

Sequence ID 3R_DroMel_CAF1
Location 24,785,302 – 24,785,422
Length 120
Max. P 0.818943
window14909

overview

Window 9

Location 24,785,302 – 24,785,422
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 88.89
Mean single sequence MFE -30.07
Consensus MFE -25.43
Energy contribution -26.10
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -2.26
Structure conservation index 0.85
SVM decision value 0.67
SVM RNA-class probability 0.818943
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24785302 120 - 27905053
CCCCGAACUCCAGCCACAUUCAGCUCGUAAAGUGGAGUGGCGGCUGGGAAAGCGCAGAAACGCAAGAAAAAUGAAAUCAAAAACAAUAACUUGUCUCCUGACAGCAUUCCACAAGAGCCA
.......((((((((.(((((.(((.....))).)))))..)))))((((.((((......))............................((((....)))))).))))....)))... ( -31.30)
>DroEre_CAF1 25482 120 - 1
CCCCGAACUCCAGCCACAUUCAGCUCGUAAAGUGGAGUGGCGGCUGGGUAAGCGCAGAAACGCAAGAAAAAUGAAAUCAAAAACAAUAACUUGUCUCCUGACAGCAUUCCACCAGAGCCA
......................((((.....(((((((((((.(((.(....).)))...)))...........................(((((....)))))))))))))..)))).. ( -30.60)
>DroYak_CAF1 17328 104 - 1
CCCCGAAC----------------UCGUAAAGUGGAGUGGCGGCUGCAAAAGCGCAGAAACGCAAGAAAAAUGAAAUCAAAAACAAUAACUUGUCUCCUGACAGCAUUCCACAAGAGCCA
.......(----------------((.....(((((((((((.((((......))))...)))...........................(((((....)))))))))))))..)))... ( -28.30)
>consensus
CCCCGAACUCCAGCCACAUUCAGCUCGUAAAGUGGAGUGGCGGCUGGGAAAGCGCAGAAACGCAAGAAAAAUGAAAUCAAAAACAAUAACUUGUCUCCUGACAGCAUUCCACAAGAGCCA
......................((((.....(((((((((((.(((........)))...)))...........................(((((....)))))))))))))..)))).. (-25.43 = -26.10 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:31:38 2006