Locus 9319

Sequence ID 3R_DroMel_CAF1
Location 24,783,787 – 24,783,907
Length 120
Max. P 0.919062
window14906

overview

Window 6

Location 24,783,787 – 24,783,907
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 94.17
Mean single sequence MFE -40.40
Consensus MFE -38.48
Energy contribution -38.70
Covariance contribution 0.22
Combinations/Pair 1.03
Mean z-score -2.14
Structure conservation index 0.95
SVM decision value 1.13
SVM RNA-class probability 0.919062
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24783787 120 - 27905053
CGUAGCGAAGGACGCUCAAUUUUGGUUUCCGUUCGCAGCUCCGGUUAUUUGCGCCCAAAAGUAUGCUUUGUCUUAUGCAUGUACGGGUGUAUUGCAUUGUGCCCGUGCUUGCAACACCCC
.((.((((((((.((.((....)))).))).))))).))...(((.....(((..(....)..))).........((((.(((((((..((......))..))))))).))))..))).. ( -38.30)
>DroEre_CAF1 24003 120 - 1
CGUUGCGAAGGACGCUCAAUUUUGGUUUCCGUUCGCAGCUCCGGUUAUUUGCGCCCCAAAGUAUGCUUUGUCUUAUGCAUGUACGGGUGUAUUGCAUUGUGCCCGUUCCUGCAACCCGCC
.(((((((((((.((.((....)))).))).))))))))..(((............(((((....))))).....((((.(.(((((..((......))..))))).).))))..))).. ( -40.50)
>DroYak_CAF1 15834 119 - 1
CGUUGCGAAGGACGCUCAAUUUUGGUUUCCGUUCGCAGCUCCGGUUAUUUGCGCCCGAAAGUAUGCUUUGUCUUAUGCAUGUACUGGUGUAUUGCAUUGUGCCAGUGCUUGCAACU-UCC
.(((((((((((.((.((....)))).))).))))))))...........(((..(....)..))).........((((.(((((((..((......))..))))))).))))...-... ( -42.40)
>consensus
CGUUGCGAAGGACGCUCAAUUUUGGUUUCCGUUCGCAGCUCCGGUUAUUUGCGCCCAAAAGUAUGCUUUGUCUUAUGCAUGUACGGGUGUAUUGCAUUGUGCCCGUGCUUGCAACACCCC
.(((((((((((.((.((....)))).))).))))))))...........(((..(....)..))).........((((.(((((((..((......))..))))))).))))....... (-38.48 = -38.70 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:31:36 2006