Locus 9314

Sequence ID 3R_DroMel_CAF1
Location 24,780,231 – 24,780,351
Length 120
Max. P 0.743205
window14892

overview

Window 2

Location 24,780,231 – 24,780,351
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 95.96
Mean single sequence MFE -27.57
Consensus MFE -25.24
Energy contribution -25.28
Covariance contribution 0.04
Combinations/Pair 1.04
Mean z-score -1.25
Structure conservation index 0.92
SVM decision value 0.46
SVM RNA-class probability 0.743205
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24780231 120 + 27905053
ACGAAGCCGGCUUGGCACGGCUGAAGCCUCCCAUUUUUAUUUUCCUCCUUCAGACUUUCUAUUUUUUUUUUUGCUAGCUGCAACGAUGCUGGAAAAUUCGCUGGCAACAAUUUUAAUUGC
.....((((((.(((...(((....)))..))).....(((((((..(.((((.....))..........((((.....)))).)).)..)))))))..))))))............... ( -28.40)
>DroSec_CAF1 11310 118 + 1
AAGAAGCCGGCUUGGCACGGCUGAAGCCUCCCAUUUUUAUUUUCCUCCUUCAGAUUUUCUAUUUUU--UUGUGCUAGUUGCAACGAUGCUGGAAAAUUCGCUGGCAACAAUUUUAAUUGC
.....((((((.(((...(((....)))..)))...................(((((((((.....--((((((.....)).))))...))))))))).))))))............... ( -28.10)
>DroSim_CAF1 6678 118 + 1
ACGAAGCCGGCUUGGCACGGCUGAAGCCUCCCAUUUUUAUUUUCCUCCUUCAGACUUUCUAUUUUU--UUGUGCUAGUUGCAACGAUGCUGGAAAAUUCGCUGGCAACAAUUUUAAUUGC
.....((((((.(((...(((....)))..))).....(((((((..(.((((.....))......--...(((.....)))..)).)..)))))))..))))))............... ( -27.80)
>DroEre_CAF1 20331 118 + 1
AAAAAGCCGGCUUGGCACGACUGAAGCCUCCCAUUUUUAUUUUCCUCCUUCAGCCUUUCUAUUUUU--UUGUGCUAGCUGCAACGAUGCUGGAAAAUUCGCUGGCAACAAUUUUAAUUGC
.....(((((((((((((((((((((.....................)))))).............--)))))))))..(((....)))..........))))))............... ( -25.31)
>DroYak_CAF1 11917 118 + 1
AAAAAGCCGGCUUGGCACGGCUGAAGCCUCCCAUUUUUAUUUUCCUCCUUUAGCCUUUCUAUUUUU--UUGUGCUAGCUGCAACGAUGCUGGAAAAUUCGCUGGCAACAAUUUUAAUUGC
.....((((((.(((...(((....)))..))).....(((((((....((((((...........--..).)))))..(((....))).)))))))..))))))............... ( -28.22)
>consensus
AAGAAGCCGGCUUGGCACGGCUGAAGCCUCCCAUUUUUAUUUUCCUCCUUCAGACUUUCUAUUUUU__UUGUGCUAGCUGCAACGAUGCUGGAAAAUUCGCUGGCAACAAUUUUAAUUGC
.....((((((.(((...(((....)))..))).....(((((((..(.((((.....))...........(((.....)))..)).)..)))))))..))))))............... (-25.24 = -25.28 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:31:23 2006