Locus 9310

Sequence ID 3R_DroMel_CAF1
Location 24,778,728 – 24,778,847
Length 119
Max. P 0.812689
window14883

overview

Window 3

Location 24,778,728 – 24,778,847
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.31
Mean single sequence MFE -35.13
Consensus MFE -31.36
Energy contribution -31.60
Covariance contribution 0.24
Combinations/Pair 1.03
Mean z-score -1.36
Structure conservation index 0.89
SVM decision value 0.65
SVM RNA-class probability 0.812689
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24778728 119 - 27905053
AUUUCGACCCAUUCCUAGUCGCAA-UCCCACUCCGCUCCAUUUCGGGGCGAACUUUUCCGUUUCUGGCCAAUAAAUGACUGGGAAACUUGCCGGGUUCCCAGGUAGACAUACUGCCGGAU
.....(((((.((((((((((...-........((((((.....)))))).......(((....)))........)))))))))).......))))).((.(((((.....))))))).. ( -35.10)
>DroSec_CAF1 9837 119 - 1
AUUUCGACCCAUUCCUAGUCGCAA-UCCCACUCCGCUCCAUUUCGGGGCGAACUUUUGCGUUUCUGGCCAAUAAAUGACUGGGAAACUUGCCGGGUUCCCAGGUAGACAUACUGCCGGAU
.....(((((.(((((((((((((-........((((((.....)))))).....))))((.....))........))))))))).......))))).((.(((((.....))))))).. ( -36.52)
>DroSim_CAF1 5217 117 - 1
AUUUCGACC--AUCCUAGUCGCAA-UCCCACUCCGCUCCAUUUCGGGGCGAACUUUUGCGUUUCUGGCCAAUAAAUGACUGGGAAACUUGCCGGGUUCCCAGGUAGACAUACUGCCGGAU
.........--.((((((((((((-........((((((.....)))))).....))))((.....))........))))))))......((((....)).(((((.....))))))).. ( -35.42)
>DroEre_CAF1 18806 119 - 1
AUUUCGACCCAUUCCUAGUCGCAA-UCCCACUCCGCUCCAUUUCGGGGCGAACUUUUCCGUUUCUGGCCAAUAAAUGACUGGGAAACUUGCCGGGCUCCCAGGUAGACAUACCGCCGGAU
....((((.........))))...-........((((((.....))))))............((((((...........(((((..((....))..)))))((((....)))))))))). ( -33.80)
>DroYak_CAF1 10385 120 - 1
AUUUCGACCCAUUCCUAGUCACAAAAUCCACUGCGCUCCAUUUCGGGGCGAACUUUUCCGUUUCUGGCCAAUAAAUGACUGGGAAACUUGCCGAGUUCCCAGGUAGACAUACCGGCGGAU
........((.((((((((((............((((((.....)))))).......(((....)))........))))))))))....((((......).((((....))))))))).. ( -34.80)
>consensus
AUUUCGACCCAUUCCUAGUCGCAA_UCCCACUCCGCUCCAUUUCGGGGCGAACUUUUCCGUUUCUGGCCAAUAAAUGACUGGGAAACUUGCCGGGUUCCCAGGUAGACAUACUGCCGGAU
..((((.....((((((((((......(((...((((((.....))))))(((......)))..)))........))))))))))..(((((((....)).))))).........)))). (-31.36 = -31.60 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:31:16 2006