Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,118,094 – 3,118,257 |
Length | 163 |
Max. P | 0.924127 |
Location | 3,118,094 – 3,118,196 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.27 |
Mean single sequence MFE | -32.37 |
Consensus MFE | -25.10 |
Energy contribution | -24.88 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.10 |
Mean z-score | -1.28 |
Structure conservation index | 0.78 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.598034 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3118094 102 - 27905053 CAACAACUAAAUGCAACAACUCAAUUGCCUUUGCAGGUCACUUUCUGGAUGACAAUCGUCUGGAGCAUCACGCGGUUACCGGACAAGGUGAGUUGAUGGUUG------------------ ...((((((.......((((((....(((((....(((.(((.((..((((.....))))..))((.....))))).)))....))))))))))).))))))------------------ ( -28.70) >DroPse_CAF1 5346 120 - 1 AGUCCAAGUAAUGUUACAACUCAAUUGCCAUUGCAGGUCACUUUCUGGAUGACAAUCGUCUGGAGCAUCAUGCGGUGGCCGGACAAGGUGAGUUACAUGUGGCAGCAUCUGUUAAGACAG .((((..((((((...(((.....))).)))))).(((((((.((..((((.....))))..))((.....))))))))))))).(((((.((((....))))..))))).......... ( -38.10) >DroSim_CAF1 11050 102 - 1 CAACAACUAAAUGCAACAACUCAAUUGCCUUUGCAGGUCACUUUCUGGAUGACAAUCGUCUGGAGCAUCAUGCGGUUACCGGACAAGGUGAGUUGAUGGUUG------------------ ...((((((.......((((((....(((((....(((.(((.((..((((.....))))..))((.....))))).)))....))))))))))).))))))------------------ ( -29.00) >DroPer_CAF1 5341 120 - 1 AGUCCAAGAAAUGUUACAACUCAAUUGCCAUUGCAGGUCACUUUCUGGAUGACAAUCGUCUGGAGCAUCAUGCGGUGGCCGGACAAGGUGAGUUACAUGUGGCAGCAUCUGUUGAGACAG .((((((((..(((((((......(..((.((((.(((((((.((..((((.....))))..))((.....))))))))).).)))))..)......)))))))...)))..)).))).. ( -40.60) >DroEre_CAF1 5506 102 - 1 CAACAACUAAAGGCAACAACUCAAUUGCUCUUGCAGGUCACUUUCUGGAUGACAAUCGUCUGGAGCAUCACGCGGUUACCGGACAAGGUGAGUUGAUGGGUG------------------ .............((.(((((((.....((((((.(((.(((.((..((((.....))))..))((.....))))).))).).)))))))))))).))....------------------ ( -28.50) >DroYak_CAF1 9306 104 - 1 UAACAACUAAAUGCAACAACUCAAUUGCUUUUGCAGGUCACUUUCUGGAUGACAAUCGUCUGGAGCAUCACGCGGUUACCGGACAAGGUGAGUUGAUGGGUG---GA------------- ..........((.((.(((((((..(((....)))(((.(((.((..((((.....))))..))((.....))))).)))........))))))).)).)).---..------------- ( -29.30) >consensus CAACAACUAAAUGCAACAACUCAAUUGCCUUUGCAGGUCACUUUCUGGAUGACAAUCGUCUGGAGCAUCACGCGGUUACCGGACAAGGUGAGUUGAUGGUUG__________________ .............((.((((((....(((.((((.(((.(((.((..((((.....))))..))((.....))))).))).).)))))))))))).))...................... (-25.10 = -24.88 + -0.22)
Location | 3,118,156 – 3,118,257 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.40 |
Mean single sequence MFE | -42.88 |
Consensus MFE | -29.45 |
Energy contribution | -29.32 |
Covariance contribution | -0.13 |
Combinations/Pair | 1.20 |
Mean z-score | -2.85 |
Structure conservation index | 0.69 |
SVM decision value | 1.16 |
SVM RNA-class probability | 0.924127 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3118156 101 + 27905053 UGACCUGCAAAGGCAAUUGAGUUGUUGCAUUUAGUUGUUGUGUGUCAGCGGAG--------------UGGCG----CCACGGCUUGGGGCAGCA-UUAGUGCUGCCCCACGGUUGUCCAU ((((.((((...((((((((((......)))))))))))))).))))..((((--------------((...----.)))((((((((((((((-....)))))))))).)))).))).. ( -42.10) >DroSec_CAF1 5804 101 + 1 UGACCUGCAAAGGCAAUUGAGUUGUUGCAUUUAGUUGUUGUGUGUCAGCGUAG--------------UGGCG----CCACGGCUUGGGGCAGCA-UUAGUGCUGCCCCACGGUUGUCCAU ((((.((((...((((((((((......)))))))))))))).))))((((..--------------..)))----).((((((((((((((((-....)))))))))).)))))).... ( -42.30) >DroSim_CAF1 11112 101 + 1 UGACCUGCAAAGGCAAUUGAGUUGUUGCAUUUAGUUGUUGUGUGUCAGCGUAG--------------UGGCG----CCACGGCUUGGGGCAGCA-UUAGUGCUGCCCCACGGUUGUCCAU ((((.((((...((((((((((......)))))))))))))).))))((((..--------------..)))----).((((((((((((((((-....)))))))))).)))))).... ( -42.30) >DroPer_CAF1 5421 119 + 1 UGACCUGCAAUGGCAAUUGAGUUGUAACAUUUCUUGGACUUGCGACUUGAGACUCGCGACGAGCGAGUUGUGUAUGUCA-GCCGUGUGGCGCCGUCUAAUGCUGCCCCAUGGUUGUCCAU .(((.((((.......(..((((((((((.....))...))))))))..)(((((((.....))))))).)))).)))(-((((((.(((((........)).))).)))))))...... ( -41.60) >DroEre_CAF1 5568 107 + 1 UGACCUGCAAGAGCAAUUGAGUUGUUGCCUUUAGUUGUUGUGUGUCAGCGCAG--------UGGCAGUGGCG----CCACGGCUUGGGGCAGCA-UUAGUGCUGCCCCACGGUUGUCCAU ..........(..((((((((((((((((....((..((((((....))))))--------..))...))))----..))))))((((((((((-....))))))))))))))))..).. ( -47.80) >DroYak_CAF1 9370 101 + 1 UGACCUGCAAAAGCAAUUGAGUUGUUGCAUUUAGUUGUUAUAUGUCAGCGCAG--------------UGGCG----CCACGGCUUGGGGCAGCA-UUGGUGCUGCCCCACGGUUGUCCAU ....((((....(((((......))))).....((((........))))))))--------------(((..----..((((((((((((((((-....)))))))))).))))))))). ( -41.20) >consensus UGACCUGCAAAGGCAAUUGAGUUGUUGCAUUUAGUUGUUGUGUGUCAGCGCAG______________UGGCG____CCACGGCUUGGGGCAGCA_UUAGUGCUGCCCCACGGUUGUCCAU .((((.((....(((((......))))).....((((........))))....................)).............((((((((((.....)))))))))).))))...... (-29.45 = -29.32 + -0.13)
Location | 3,118,156 – 3,118,257 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.40 |
Mean single sequence MFE | -33.55 |
Consensus MFE | -22.28 |
Energy contribution | -22.95 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -2.52 |
Structure conservation index | 0.66 |
SVM decision value | 0.92 |
SVM RNA-class probability | 0.882140 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3118156 101 - 27905053 AUGGACAACCGUGGGGCAGCACUAA-UGCUGCCCCAAGCCGUGG----CGCCA--------------CUCCGCUGACACACAACAACUAAAUGCAACAACUCAAUUGCCUUUGCAGGUCA ((((....))))(((((((((....-)))))))))..(((((((----((...--------------...)))).))..............(((((...(......)...)))))))).. ( -31.60) >DroSec_CAF1 5804 101 - 1 AUGGACAACCGUGGGGCAGCACUAA-UGCUGCCCCAAGCCGUGG----CGCCA--------------CUACGCUGACACACAACAACUAAAUGCAACAACUCAAUUGCCUUUGCAGGUCA ((((....))))(((((((((....-)))))))))..(((((((----((...--------------...)))).))..............(((((...(......)...)))))))).. ( -32.00) >DroSim_CAF1 11112 101 - 1 AUGGACAACCGUGGGGCAGCACUAA-UGCUGCCCCAAGCCGUGG----CGCCA--------------CUACGCUGACACACAACAACUAAAUGCAACAACUCAAUUGCCUUUGCAGGUCA ((((....))))(((((((((....-)))))))))..(((((((----((...--------------...)))).))..............(((((...(......)...)))))))).. ( -32.00) >DroPer_CAF1 5421 119 - 1 AUGGACAACCAUGGGGCAGCAUUAGACGGCGCCACACGGC-UGACAUACACAACUCGCUCGUCGCGAGUCUCAAGUCGCAAGUCCAAGAAAUGUUACAACUCAAUUGCCAUUGCAGGUCA .(((((..((.((.(((.((........))))).)).)).-.(((.......((((((.....)))))).....)))....))))).((..(((.....(......).....)))..)). ( -30.10) >DroEre_CAF1 5568 107 - 1 AUGGACAACCGUGGGGCAGCACUAA-UGCUGCCCCAAGCCGUGG----CGCCACUGCCA--------CUGCGCUGACACACAACAACUAAAGGCAACAACUCAAUUGCUCUUGCAGGUCA ((((....))))(((((((((....-)))))))))..((.((((----((....)))))--------).))...(((..............(....).......((((....))))))). ( -40.60) >DroYak_CAF1 9370 101 - 1 AUGGACAACCGUGGGGCAGCACCAA-UGCUGCCCCAAGCCGUGG----CGCCA--------------CUGCGCUGACAUAUAACAACUAAAUGCAACAACUCAAUUGCUUUUGCAGGUCA ...(((.....((((((((((....-)))))))))).((.((((----(((..--------------..))))).))...............((((........))))....))..))). ( -35.00) >consensus AUGGACAACCGUGGGGCAGCACUAA_UGCUGCCCCAAGCCGUGG____CGCCA______________CUACGCUGACACACAACAACUAAAUGCAACAACUCAAUUGCCUUUGCAGGUCA ...(((.....((((((((((.....))))))))))....................................................................((((....))))))). (-22.28 = -22.95 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:41 2006