| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,778,239 – 24,778,337 |
| Length | 98 |
| Max. P | 0.926039 |
| Location | 24,778,239 – 24,778,337 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 95.24 |
| Mean single sequence MFE | -36.90 |
| Consensus MFE | -35.05 |
| Energy contribution | -35.50 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.95 |
| SVM decision value | 1.17 |
| SVM RNA-class probability | 0.926039 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24778239 98 + 27905053 AGAAGGCGGAGGAGGUGCGUAGGUGUGCCUAUAUCCUGCCGCUGUCUCUGUGCGUUUGUGUGUGUGUGUGUGCCUGCGACACGUAGCACAUUUUAUUU (((.(((((((((.....(((((....))))).)))).))))).))).(((((...((((((((.((....)).))).)))))..)))))........ ( -34.10) >DroSec_CAF1 9350 98 + 1 GGAUGGCGGAGGCGGUGCGUAGGUGUGCCUAUAUCCUGCCGCUGUCUCUGUGCGUUUGUGUGUGUGUGUGUGCCUGCGACACGUAGCACAUUUUAUUU (((((((((((((((((.((((((((....))).))))))))))))))))).)))))((((((..((((((....)).))))...))))))....... ( -38.80) >DroSim_CAF1 4733 94 + 1 GGAUGGCGGAGGCGGUGCGUAGGUGUGCCUAUAUCCUGCCGCUGUCUCUGUGCGUUUGUGUG----UGUGUGCCUGCGACACGUAGCACAUUUUAUUU (((((((((((((((((.((((((((....))).))))))))))))))))).)))))(((..----.((((((.((((...))))))))))..))).. ( -37.80) >consensus GGAUGGCGGAGGCGGUGCGUAGGUGUGCCUAUAUCCUGCCGCUGUCUCUGUGCGUUUGUGUGUGUGUGUGUGCCUGCGACACGUAGCACAUUUUAUUU (((((((((((((((((.((((((((....))).))))))))))))))))).)))))..........((((((.((((...))))))))))....... (-35.05 = -35.50 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:31:15 2006