Locus 9307

Sequence ID 3R_DroMel_CAF1
Location 24,777,430 – 24,777,538
Length 108
Max. P 0.564081
window14879

overview

Window 9

Location 24,777,430 – 24,777,538
Length 108
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 88.29
Mean single sequence MFE -29.23
Consensus MFE -22.63
Energy contribution -23.99
Covariance contribution 1.36
Combinations/Pair 1.04
Mean z-score -1.50
Structure conservation index 0.77
SVM decision value 0.06
SVM RNA-class probability 0.564081
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24777430 108 + 27905053
CAAAACAAAUCACGGGCCCAACGCCAAAGUUUCGCCCAAAAUUGAUGCCUUAUGAAUCGAGAGCGCCUAU------------AUCCGCGAAGGACCAACUUUGCGCCAGCUUUGGGCCGU
..............(((((((.((........(((......(((((.........)))))..))).....------------...(((((((......)))))))...)).))))))).. ( -29.50)
>DroSec_CAF1 8557 108 + 1
CAAAACAAAUCACGGGUCCAACGCCAAAGUUUGGCCCAAAAUUGAUGCCUUAUGAAUCGAGAGCGCCUAU------------AUCCGCGAAGGACCAACUUUGCGCCAGCUUUGGGCCGC
..............(((.....))).......((((((((.(((..(((((.......))).))......------------...(((((((......))))))).))).)))))))).. ( -30.30)
>DroSim_CAF1 3936 108 + 1
CAAAACAAAUCACGGGUCCAACGCCAAAGUUUGGCCCAAAAUUGAUGCCUUAUGAAUCGAGAGCGCCUAU------------AUCCGCGAAGGACCAACUUUGCGCCAGCUUUGGGCCGU
..............(((.....))).......((((((((.(((..(((((.......))).))......------------...(((((((......))))))).))).)))))))).. ( -30.30)
>DroEre_CAF1 17520 107 + 1
CAAAACAAAUCACAGGCCCAACGCCAAACUUUCGCCCAAAAUUGAUGCCUUAUGAAUCGAGCGCGCCUAA------------ACCCGCGAAGGACCAACUUUUC-CCAGCAUUGGGCCGU
..............(((((((.((......(((((........(.((((((.......))).))).)...------------....)))))(((........))-)..)).))))))).. ( -26.06)
>DroYak_CAF1 9102 110 + 1
CAAAACAAAUCACGGGCCCAACGCCAAAGUUUGGCCCAAAAUUGAUGCCUUAUGAAUCGAGAGCGCCUAUAUAUAUAUAUAUAUCCGCGAAGGACCAACUUU----------UGGGCCGU
..............(((.....))).......((((((((((((...((((......(....)(((..((((((....))))))..)))))))..))).)))----------)))))).. ( -30.00)
>consensus
CAAAACAAAUCACGGGCCCAACGCCAAAGUUUGGCCCAAAAUUGAUGCCUUAUGAAUCGAGAGCGCCUAU____________AUCCGCGAAGGACCAACUUUGCGCCAGCUUUGGGCCGU
..............(((((((.(((((((((.((.((....(((((.........)))))..(((....................)))...)).))))))))).....)).))))))).. (-22.63 = -23.99 +   1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:31:12 2006