Locus 9302

Sequence ID 3R_DroMel_CAF1
Location 24,774,511 – 24,774,614
Length 103
Max. P 0.584606
window14869

overview

Window 9

Location 24,774,511 – 24,774,614
Length 103
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 85.31
Mean single sequence MFE -41.16
Consensus MFE -28.92
Energy contribution -30.04
Covariance contribution 1.12
Combinations/Pair 1.07
Mean z-score -1.71
Structure conservation index 0.70
SVM decision value 0.10
SVM RNA-class probability 0.584606
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24774511 103 - 27905053
AG---CCACCAACCGCUGUAAUUGGCAACUCUUCGGCGGGCUCAAUUUUUAAUUGGCAAUUGCGAUUUGGGCUUGGGGCUUU-------GGUC-------CUUGGGCUUUGGCGGGCGCU
.(---((.((((((((((.((..(....)..))))))))((((((.((.((((.....)))).)).)))))))))).(((..-------((((-------....))))..))).)))... ( -38.40)
>DroSec_CAF1 5720 110 - 1
AA---CCACCAACCGCUGUAAUUGGCAACACUUCGGCGGGCUCAAUUUUUAAUUGGCAAUUGCGAUUUGGGAUUGGGGCUUU-------GGGCCUUGGGCCUUGGGCUUUGGCGGGUGCU
..---((.((((((((((.((.((....)).)))))))).((((((((..(((((.(....))))))..))))))))(((..-------(((((...)))))..))).)))).))..... ( -43.40)
>DroSim_CAF1 1106 110 - 1
AA---CCACCAACCGCUGUAAUUGGCAACUCUUCGGCGGGCUCAAUUUUUAAUUGGCAAUUGCGAUUUGGGAUUGGGGCUUU-------GGGCCUUGGGCCUUGGGCUUUGGCGGGCGCU
..---((.((((((((((.((..(....)..)))))))).((((((((..(((((.(....))))))..))))))))(((..-------(((((...)))))..))).)))).))..... ( -42.10)
>DroEre_CAF1 14595 103 - 1
AG---CCACCAACCGCUGUAAUUGGCAACUCUUCGGCGGGCUCAAUUUUUAAUUGGCAAUUGGGUUUUGCGCCUGGGGCUUG--------------GGGCUUUGGGCUUUGGAGGGCGCU
.(---((.((((((((((.((..(....)..))))))))((((((((.((....)).)))))))).....(((..((((...--------------..))))..))).))))..)))... ( -40.00)
>DroYak_CAF1 6260 120 - 1
AGCAACCACCAACCGCUGUAAUUGGCAACUCUUCGGCGGGCUCAAUUUUUAAUUGGCAAUUGGGUUUGGCGCCUGGGACUUGGUGCUUUGGGCUUUGGGCUUUGGGCUUUGGCUGGCGCU
(((..(((((((((((((.((..(....)..))))))))((((((.........(.(((......))).)(((..(..((..(....)..))..)..))).)))))).)))).))).))) ( -41.90)
>consensus
AG___CCACCAACCGCUGUAAUUGGCAACUCUUCGGCGGGCUCAAUUUUUAAUUGGCAAUUGCGAUUUGGGCUUGGGGCUUU_______GGGC_UUGGGCCUUGGGCUUUGGCGGGCGCU
.....((.((((((((((.((..(....)..))))))))((.((((.....)))))).............(((..((((((...............))))))..))).)))).))..... (-28.92 = -30.04 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:31:03 2006