Locus 9301

Sequence ID 3R_DroMel_CAF1
Location 24,773,593 – 24,773,702
Length 109
Max. P 0.500000
window14868

overview

Window 8

Location 24,773,593 – 24,773,702
Length 109
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 86.09
Mean single sequence MFE -23.26
Consensus MFE -15.23
Energy contribution -15.47
Covariance contribution 0.24
Combinations/Pair 1.14
Mean z-score -1.81
Structure conservation index 0.65
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24773593 109 - 27905053
CUAAAAUGCAUUUAAUCUUCUUAUUGCUGCUGGCC---------AAAAUACAGCAUAAUACAGCAGAAUACAGCAG--AAUAUGGAGGAAUACAGGAAACUGUGCGAAGGGUGUACUUAU
......(((((((..((((((((((.(((((((..---------......).((........))......))))))--)))).)))))).(((((....)))))....)))))))..... ( -28.00)
>DroSec_CAF1 4833 97 - 1
CUAAAAUGCAUUUAAUCUUCUUAUUGCUGCUGGC----------AAAAUACAGCAGAAUACAGCAGAAUAUGGCAG--AA----------UAU-GGAAACUGAGCGAAGGGGGUACUUAU
..............((((((((....((((((..----------......))))))......((...((((.....--.)----------)))-(....)...)).))))))))...... ( -20.00)
>DroSim_CAF1 208 98 - 1
CUAAAAUGCAUUUAAUCUUCUUAUUGCUGCUGGC----------AAAAUACAGCAGAAUACAGCAGAAUAUGGCAG--AA----------UACAGGAAACUGAGCGAAGGGGGUACUUAU
......(((...((.(((.((((((.((((((..----------......)))))))))).)).))).))..))).--..----------..(((....)))....(((......))).. ( -23.80)
>DroEre_CAF1 13706 98 - 1
CUAAAAUGCAUUUAAUCUUCUUACUGCUGCUGGC----------AAAAUACAGCAUAAUACAUCAGAAUAUAGCAG--AA----------UACAGGAAACUGUGCGAAGGUGGUACUUAU
......(((.....((((((...(((((((((..----------......))))......(....).....)))))--..----------(((((....))))).)))))).)))..... ( -24.70)
>DroYak_CAF1 5344 110 - 1
CUAAAAUGCAUUUAAUCUUCUUAUUGCUGCUGGCAUAAUACAGCAAAAUACAGCAUAAUACAUCAGAAUAUGGCAGAGAA----------UACAGGAAACUGUUCAAAGGUGGUACUUAU
........(((((....(((((..((((((((........)))))........((((...........))))))))))))----------.((((....))))....)))))........ ( -19.80)
>consensus
CUAAAAUGCAUUUAAUCUUCUUAUUGCUGCUGGC__________AAAAUACAGCAUAAUACAGCAGAAUAUGGCAG__AA__________UACAGGAAACUGUGCGAAGGGGGUACUUAU
..............((((((((.(((((((((..................))))......(....).....)))))................(((....)))....))))))))...... (-15.23 = -15.47 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:31:02 2006