Locus 9300

Sequence ID 3R_DroMel_CAF1
Location 24,772,340 – 24,772,454
Length 114
Max. P 0.939286
window14867

overview

Window 7

Location 24,772,340 – 24,772,454
Length 114
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 83.75
Mean single sequence MFE -30.87
Consensus MFE -22.23
Energy contribution -22.79
Covariance contribution 0.56
Combinations/Pair 1.04
Mean z-score -2.72
Structure conservation index 0.72
SVM decision value 1.30
SVM RNA-class probability 0.939286
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24772340 114 + 27905053
AAGACAAAACA-----CACUACUGAGCCAAGAACAAACGGCCUGGGAACAACGAAGCUGUUUGCCCCAGAAAGUUUAUGGCAGGAAACUGCAACAUAAAU-UCAGCCGAAACUUAAAUUC
...........-----.....................(((((((((...((((....))))...)))))..((((((((((((....))))..)))))))-)..))))............ ( -28.80)
>DroPse_CAF1 24458 117 + 1
AAGACAAAACAGAGGACACUGCAGAGCAAAGAACAAACGGGCUGAGG---CCGAAACUGUUUGUCGAGGCAGGUUUAUGGCAGGAAACUGGAACAUAAAUUUCUGCUGAAACAGAAACUC
..((((((.(((.(..(..(((...)))..)..).....(((....)---))....)))))))))..((((((((((((.(((....)))...)))))))..)))))............. ( -31.90)
>DroPer_CAF1 24764 117 + 1
AAGACAAAACAGAGGACACUGCAGAGCAAAGAACAAACGGGCUGAGG---CCGAAACUGUUUGUCGAGGCAGGUUUAUGGCAGGAAACUGGAACAUAAAUUUCUGCUGAAACAGAAACUC
..((((((.(((.(..(..(((...)))..)..).....(((....)---))....)))))))))..((((((((((((.(((....)))...)))))))..)))))............. ( -31.90)
>consensus
AAGACAAAACAGAGGACACUGCAGAGCAAAGAACAAACGGGCUGAGG___CCGAAACUGUUUGUCGAGGCAGGUUUAUGGCAGGAAACUGGAACAUAAAUUUCUGCUGAAACAGAAACUC
..................(.(((((((...((.(((((((................)))))))))...))..(((((((.(((....)))...))))))).))))).)............ (-22.23 = -22.79 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:31:01 2006