Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,117,676 – 3,117,812 |
Length | 136 |
Max. P | 0.961602 |
Location | 3,117,676 – 3,117,772 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.62 |
Mean single sequence MFE | -44.32 |
Consensus MFE | -31.27 |
Energy contribution | -30.27 |
Covariance contribution | -1.00 |
Combinations/Pair | 1.19 |
Mean z-score | -2.30 |
Structure conservation index | 0.71 |
SVM decision value | 1.53 |
SVM RNA-class probability | 0.961602 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3117676 96 - 27905053 C---------------------GCCGUCGCCGCCGCCCACCAUCACAACCAGGCGGUGGCAGCUGCUUCGGCGGCCGCUU---UACUGGUGGUGCCCCAGCCGAUCAAUGCCAGCAAAAU .---------------------......(((((((((..............))))))))).(((((.((((((((((((.---....)))))....)).))))).....).))))..... ( -39.24) >DroPse_CAF1 5039 120 - 1 UGGGAAUCAUGUGAGCGCAGCAGCCGCUGCUGCUGCCCAUCAUCACAGUUCUGCAGUGGCAGCUGCCUCGGCGGCGGCUUCUCUUCUCGUCGUGCCCCAACCCAUCAAUGCCAGCAAAAU ((((........(((.(((((.((((((((.((((..........))))...)))))))).))))))))((((.((((..........))))))))....))))................ ( -48.10) >DroSim_CAF1 10660 96 - 1 C---------------------GCCGUCGCCGCCGCCCACCAUCACAACCAGGCGGUGGCAGCUGCUUCGGCGGCCGCUU---UGCUGGUGGUGCCCCAGCCGAUCAAUGCCAGCAAAAU .---------------------((....(((((((((..............))))))))).(((((....))))).))((---((((((((((......))).......))))))))).. ( -44.85) >DroPer_CAF1 5034 120 - 1 UGGGAAUCAUGUGAGCGCCGCAGCCGCUGCUGCUGCCCAUCAUCACAGCUCUGCAGUGGCAGCUGCCUCGGCGGCGGCUUCUCUUCUCGUCGUGCCCCAACCCAUCAAUGCCAGCAAAAU ((((.((.(((.(((.(((...((((((((.((((..........))))...)))))))).(((((....))))))))..)))....))).))..))))..................... ( -45.10) >DroEre_CAF1 5172 96 - 1 C---------------------GCCGUCGCCGCCGCCCACCAUCACAACCAGGCGGUGGCGGCUGCCUCGGCGGCCGCUU---UGCUGGUGGUGCCCCAGCCGAUCAAUGCCAGCAAAAU .---------------------((....(((((((((..............)))))))))((((((....))))))))((---((((((((((......))).......))))))))).. ( -47.25) >DroYak_CAF1 8925 96 - 1 C---------------------GCCGUCGCCGCCGCCCACCAUCACAACCAAGCGGUGGCAGCUGCUUCGGCGGCCGCUU---UGCUGGUGGUGCCCCAGCCGAUCAAUGCCAGCAAAAU .---------------------((....((((((((................)))))))).(((((....))))).))((---((((((((((......))).......))))))))).. ( -41.40) >consensus C_____________________GCCGUCGCCGCCGCCCACCAUCACAACCAGGCGGUGGCAGCUGCCUCGGCGGCCGCUU___UGCUGGUGGUGCCCCAGCCGAUCAAUGCCAGCAAAAU ......................((.((.((((((((................)))))))).)).))...((((.(((((........)))))))))........................ (-31.27 = -30.27 + -1.00)
Location | 3,117,713 – 3,117,812 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.77 |
Mean single sequence MFE | -49.54 |
Consensus MFE | -35.43 |
Energy contribution | -35.76 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.17 |
Mean z-score | -2.36 |
Structure conservation index | 0.72 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.798431 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3117713 99 - 27905053 CCGUGGUUGGAAAUUCCAGUCUGGGCGCCAGCUCCCACCAC---------------------GCCGUCGCCGCCGCCCACCAUCACAACCAGGCGGUGGCAGCUGCUUCGGCGGCCGCUU ..((((((((.....)))....(((.(....).))))))))---------------------((....(((((((((..............))))))))).(((((....))))).)).. ( -45.64) >DroSec_CAF1 5396 99 - 1 CGGUGGGUGGAAAUUCCAGCCUGGGCGCCAGCUCCCACCAC---------------------GCCGUCGCCGCCGCCCACCAUCACAACCAGGCGGUGGCAGCUGCUUCGGCGGCCGCUU ((((((((((.....((.....))((....))..))))).)---------------------))))..(((((((((..............))))))))).(((((....)))))..... ( -49.14) >DroSim_CAF1 10697 99 - 1 CGGUGGGUGGAAAUUCCAGCCUGGGCGCCAGCUCCCACCAC---------------------GCCGUCGCCGCCGCCCACCAUCACAACCAGGCGGUGGCAGCUGCUUCGGCGGCCGCUU ((((((((((.....((.....))((....))..))))).)---------------------))))..(((((((((..............))))))))).(((((....)))))..... ( -49.14) >DroPer_CAF1 5074 120 - 1 CUGGCGGAGGCAACUCCAGCCUGGGCGCCCCAUCACAUCAUGGGAAUCAUGUGAGCGCCGCAGCCGCUGCUGCUGCCCAUCAUCACAGCUCUGCAGUGGCAGCUGCCUCGGCGGCGGCUU ..(((((((....)))).)))((((((((((((......)))))..((....))))))).))((((((((.((((..........))))...))))))))(((((((.....))))))). ( -62.00) >DroEre_CAF1 5209 99 - 1 CUGUGGGCGGCAAUUCCAGCCUGGGCGCCAGCUCCCACCAC---------------------GCCGUCGCCGCCGCCCACCAUCACAACCAGGCGGUGGCGGCUGCCUCGGCGGCCGCUU ....(((((((..........((((.(....).))))...(---------------------((((..((.((((((.(((..(.......)..))))))))).))..)))))))))))) ( -49.70) >DroYak_CAF1 8962 99 - 1 CUGUAGGUGGCAAUUCCAGCCUCGGCGCCAGUUCCCACCAC---------------------GCCGUCGCCGCCGCCCACCAUCACAACCAAGCGGUGGCAGCUGCUUCGGCGGCCGCUU ..((.(((((.((((...((....))...)))).)))))))---------------------((....((((((((................)))))))).(((((....))))).)).. ( -41.59) >consensus CUGUGGGUGGAAAUUCCAGCCUGGGCGCCAGCUCCCACCAC_____________________GCCGUCGCCGCCGCCCACCAUCACAACCAGGCGGUGGCAGCUGCUUCGGCGGCCGCUU .....(((((........((....))........))))).......................((....(((((((((..............))))))))).(((((....))))).)).. (-35.43 = -35.76 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:38 2006