Locus 9299

Sequence ID 3R_DroMel_CAF1
Location 24,772,037 – 24,772,130
Length 93
Max. P 0.966695
window14866

overview

Window 6

Location 24,772,037 – 24,772,130
Length 93
Sequences 3
Columns 98
Reading direction reverse
Mean pairwise identity 76.06
Mean single sequence MFE -25.23
Consensus MFE -13.58
Energy contribution -13.92
Covariance contribution 0.34
Combinations/Pair 1.14
Mean z-score -2.69
Structure conservation index 0.54
SVM decision value 1.60
SVM RNA-class probability 0.966695
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24772037 93 - 27905053
GUGUAUAAAUAUGCACAUAUAGAUUCGCAUGAA-----AUCUGUGUACGUACGGAUGUGCCUGUGUGCGUAUGCAAAGAAUGGAGAGCCUGGAUUUAU
((((((....))))))..((((((((.......-----...((((((((((((.(......).))))))))))))......((....)).)))))))) ( -25.10)
>DroPse_CAF1 24163 88 - 1
GUGUAUGAAU--GCGCAUAUAUAUUCAGAUACAUUUGCAUCUGAGUCUGUGCG------UGUGUGUGCAUAUGCAAAGAAUGAA--GUCUGGAUUUAU
(((((((.((--(((((((...((((((((.(....).)))))))).))))))------))).....)))))))..........--............ ( -24.30)
>DroPer_CAF1 24471 84 - 1
GUGUAUGAAU--GCGCAUAUAUAUUCAGAUACAUUUGCAUCUGAGUCUGU----------GUGUGUGCAUAUGCAAAGAAUGAA--GUCUGGAUUUAU
(((((((...--(((((((((.((((((((.(....).)))))))).)))----------)))))).)))))))..........--............ ( -26.30)
>consensus
GUGUAUGAAU__GCGCAUAUAUAUUCAGAUACAUUUGCAUCUGAGUCUGU_CG_______GUGUGUGCAUAUGCAAAGAAUGAA__GUCUGGAUUUAU
.((((((.....((((((((..((((((((........))))))))..............)))))))).))))))....................... (-13.58 = -13.92 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:31:00 2006