Locus 9296

Sequence ID 3R_DroMel_CAF1
Location 24,769,410 – 24,769,555
Length 145
Max. P 0.700644
window14860 window14861

overview

Window 0

Location 24,769,410 – 24,769,515
Length 105
Sequences 3
Columns 112
Reading direction forward
Mean pairwise identity 86.31
Mean single sequence MFE -24.09
Consensus MFE -21.67
Energy contribution -21.56
Covariance contribution -0.11
Combinations/Pair 1.11
Mean z-score -1.49
Structure conservation index 0.90
SVM decision value 0.35
SVM RNA-class probability 0.700644
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24769410 105 + 27905053
--UCUGUAUGUUUUUUU-----UUUUUUAGCCCAUUUUUGCCCCAUUUUUUGCGCCUGGCCGUUAAAAAACUACAAGCAAAUGGUUCGGCACAAAAUUCGGCAUUUGUUCUG
--...............-----.....(((..((....((((.....(((((.(((..((((((...............))))))..))).)))))...))))..))..))) ( -22.06)
>DroPse_CAF1 21418 112 + 1
UCUCUGUUUCGUUUUUUCCGAGUUUUCCUUCUGCUUUUUGCCCCAUUUUUUGUGCUUGGCCGUUAAAAAACUACCAGCAAAUGGUUCGGCACAAAAUUCGGCAUUUGUUGAG
.......((((.......)))).......((.((....((((.....(((((((((..((((((...............))))))..)))))))))...))))...)).)). ( -25.26)
>DroPer_CAF1 21712 112 + 1
UCUCUGUUUCGUUUUUUCCGAGUUUUCCUUCUGCUUUUUGCCCCAUUUUUUGUGCUUGGCCGUUAAAAAACUACCAGCAAAUGGUUCGGCACGAAAUUCGGCAUUUGUUGAG
.......((((.......)))).......((.((....((((.....(((((((((..((((((...............))))))..)))))))))...))))...)).)). ( -24.96)
>consensus
UCUCUGUUUCGUUUUUUCCGAGUUUUCCUUCUGCUUUUUGCCCCAUUUUUUGUGCUUGGCCGUUAAAAAACUACCAGCAAAUGGUUCGGCACAAAAUUCGGCAUUUGUUGAG
......................................((((.....(((((((((..((((((...............))))))..)))))))))...))))......... (-21.67 = -21.56 +  -0.11)

alignment

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secondary structure

Postscript

dotplot

Postscript

Window 1

Location 24,769,436 – 24,769,555
Length 119
Sequences 3
Columns 119
Reading direction forward
Mean pairwise identity 86.13
Mean single sequence MFE -25.73
Consensus MFE -21.67
Energy contribution -21.56
Covariance contribution -0.11
Combinations/Pair 1.11
Mean z-score -1.67
Structure conservation index 0.84
SVM decision value 0.14
SVM RNA-class probability 0.604145
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24769436 119 + 27905053
AUUUUUGCCCCAUUUUUUGCGCCUGGCCGUUAAAAAACUACAAGCAAAUGGUUCGGCACAAAAUUCGGCAUUUGUUCUGCCUCUAUUUCCUUGUCUUUGUUUUCCGGGCCCUCGUUUUU
......((((....(((((.(((..((((((...............))))))..))).)))))...((((.......))))........................)))).......... ( -26.96)
>DroPse_CAF1 21451 108 + 1
CUUUUUGCCCCAUUUUUUGUGCUUGGCCGUUAAAAAACUACCAGCAAAUGGUUCGGCACAAAAUUCGGCAUUUGUUGAGC------UUCCUUUUCGUAGUAUUCCGG-----CUUUCUU
......(((.....(((((((((..((((((...............))))))..)))))))))((((((....)))))).------...................))-----)...... ( -25.26)
>DroPer_CAF1 21745 108 + 1
CUUUUUGCCCCAUUUUUUGUGCUUGGCCGUUAAAAAACUACCAGCAAAUGGUUCGGCACGAAAUUCGGCAUUUGUUGAGC------UUCCUUUUCGUAGUAUUCCGG-----CUUUCUU
......(((.....(((((((((..((((((...............))))))..)))))))))((((((....)))))).------...................))-----)...... ( -24.96)
>consensus
CUUUUUGCCCCAUUUUUUGUGCUUGGCCGUUAAAAAACUACCAGCAAAUGGUUCGGCACAAAAUUCGGCAUUUGUUGAGC______UUCCUUUUCGUAGUAUUCCGG_____CUUUCUU
.....((((.....(((((((((..((((((...............))))))..)))))))))...))))................................................. (-21.67 = -21.56 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:30:56 2006