Locus 9295

Sequence ID 3R_DroMel_CAF1
Location 24,763,351 – 24,763,456
Length 105
Max. P 0.995634
window14859

overview

Window 9

Location 24,763,351 – 24,763,456
Length 105
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 76.24
Mean single sequence MFE -29.86
Consensus MFE -16.27
Energy contribution -16.65
Covariance contribution 0.38
Combinations/Pair 1.12
Mean z-score -2.88
Structure conservation index 0.55
SVM decision value 2.60
SVM RNA-class probability 0.995634
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24763351 105 - 27905053
GGCGCGCUGGCGACGUGCAUAUGCUUGAAUGAGCGUGUUCGCACUUGCUGGCGAGGGAACA-AAAA-------AUAAAAU-GGCAACCAAAUGCACAGAG------AAAACCCAUACAAA
....(((..((((.((((((((((((....))))))))..))))))))..))).(((..((-....-------......)-)(((......)))......------....)))....... ( -32.50)
>DroPse_CAF1 14798 115 - 1
CGUGCGAUGCCGACGUGCAUAUGCUUGAAUGCGCGUGUUCGCACUUGCAUGCAACACAAAA-AAAAAUG-CAUAUAAAAU-GGCAACCAAAUGCACAGCAAACC--AAAAUGCACACAAG
.(((((.(((((..((((((........))))))(((((.(((......))))))))....-.......-.........)-))))......(((...)))....--....)))))..... ( -29.60)
>DroWil_CAF1 12193 110 - 1
AGAGCAAUGCAGACGUGCAUAUGCUUGAAUGCGCGUGUUCGCACUUGCACACA-----AAAAAAGAACGACAAGCAAACUCGGCAACCAAAUGCACAGCACAUUCAAAAACCCA-----A
.((((((((((....))))).)))))(((((.((((((..((....)))))).-----...............(((.....(....)....)))...)).))))).........-----. ( -27.00)
>DroPer_CAF1 14986 116 - 1
CGUGCGAUGGCGACGUGCAUAUGCUUGAAUGCGCGUGUUCGCACUUGCAUGCAACACAAAAAAAAAAUG-CAUAUAAAAU-GGCAACCAAAUGCACAGCAAACC--AAAAUACACACAAG
.((((((..((.((((((((........))))))))))))))))(((((((((..............))-)))......(-((((......))).))))))...--.............. ( -30.34)
>consensus
CGUGCGAUGCCGACGUGCAUAUGCUUGAAUGCGCGUGUUCGCACUUGCAUGCAACACAAAA_AAAAAUG_CAUAUAAAAU_GGCAACCAAAUGCACAGCAAACC__AAAACCCACACAAA
.(((((......((((((((........))))))))((..((....))..)).......................................)))))........................ (-16.27 = -16.65 +   0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:30:54 2006