Locus 9293

Sequence ID 3R_DroMel_CAF1
Location 24,762,113 – 24,762,207
Length 94
Max. P 0.964557
window14856

overview

Window 6

Location 24,762,113 – 24,762,207
Length 94
Sequences 3
Columns 113
Reading direction forward
Mean pairwise identity 74.69
Mean single sequence MFE -23.70
Consensus MFE -15.31
Energy contribution -16.09
Covariance contribution 0.78
Combinations/Pair 1.05
Mean z-score -1.88
Structure conservation index 0.65
SVM decision value 1.57
SVM RNA-class probability 0.964557
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24762113 94 + 27905053
UUCUGCUGCAACUCCUUCGCCGGCGACAAUGACAACAUGGAAAUCCAUUUGAGUCCACAAUCUUGCUAUGUUGCAGCACACACAUCUACACGUG-------------------
...(((((((((....(((....)))....(((...((((....))))....)))..............)))))))))..(((........)))------------------- ( -22.50)
>DroPse_CAF1 13460 110 + 1
---CGCUGCAACUGCUCCGCCAGCGACAAGGACAACAAGAAAAUCCAUUUGAGUCCACAAGCUUGCCAUGUUGCAGCAAACACACCUACGCCCACACCCACACCCACAGGCGG
---.((((((((((....((.(((.....((((..((((........)))).))))....))).)))).))))))))...........((((................)))). ( -29.09)
>DroYak_CAF1 13144 94 + 1
UUCUGCUGCAACUCCUUCGCCAGCGACAAUGACAACAUGGAAAUCCAUUUGAGUCUACAAUCUUGCUGUGUUGCCGCACACACAUCUACACCAG-------------------
...(((.(((((........((((((....(((...((((....))))....))).......)))))).))))).)))................------------------- ( -19.50)
>consensus
UUCUGCUGCAACUCCUUCGCCAGCGACAAUGACAACAUGGAAAUCCAUUUGAGUCCACAAUCUUGCUAUGUUGCAGCACACACAUCUACACCAG___________________
....((((((((......((.((.......(((...((((....))))....)))......)).))...)))))))).................................... (-15.31 = -16.09 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:30:52 2006