Locus 9292

Sequence ID 3R_DroMel_CAF1
Location 24,761,988 – 24,762,099
Length 111
Max. P 0.558831
window14855

overview

Window 5

Location 24,761,988 – 24,762,099
Length 111
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 85.43
Mean single sequence MFE -34.34
Consensus MFE -22.92
Energy contribution -22.44
Covariance contribution -0.48
Combinations/Pair 1.30
Mean z-score -1.81
Structure conservation index 0.67
SVM decision value 0.05
SVM RNA-class probability 0.558831
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24761988 111 - 27905053
-AUAAGCAUACGGAGA--AGCAAUUCAAGUUGCCGUCACGGAAGUUGCCUGUUGAAAUUAAGCCAACAGCAAUUAUGGCAACAAAUGCGGCUAGCAGCGCCGAUUAUGUGUCCC------
-....((((((((...--.((.......((((((((......((((((.(((((.........)))))))))))))))))))...(((.....))))).)))..))))).....------ ( -32.50)
>DroPse_CAF1 13314 111 - 1
-GGAGGCAGAGGCAGG--AGCAAUUCAAGUUGCCGUCACGGAAGUUGCCUGUUGAAAUUAAGCCAACAGCAAUUAUGGCAACAAAUGCGGCUAGCAGCGUCGAUUAUGCCUUCC------
-(((((((((.((.((--(....)))..((((((((......((((((.(((((.........)))))))))))))))))))...(((.....))))).)).....))))))).------ ( -38.40)
>DroWil_CAF1 11287 120 - 1
GUAAGGGAUAUGGAGGGCUGCAAUUCAAGUUGCCGGCAAGGAAGUCGGCUGUUGAAAUUAAGCCAACAGCAAUUACAGCAACAAAUGCGACAAGCAGCGUCGAUUAUGAAUGCUUCUUAU
((((..(...((...((((....(((((...((((((......))))))..)))))....))))..)).)..))))((((.((....((((.......))))....))..))))...... ( -33.60)
>DroYak_CAF1 13019 111 - 1
-AUAAGCAGACGGAGG--AGCAACUCAAGUUGCCGUCACGGAAGUUGCCUGUUGAAAUUAAGCCAACAGCAAUUAUGCCAACAAAUGCGGCUAGCAACGCCGAUUAUGUGUCCC------
-.......(((.((.(--.(((((....)))))).))..((.((((((.(((((.........)))))))))))...)).(((....((((.......))))....))))))..------ ( -31.20)
>DroPer_CAF1 13490 111 - 1
-AGAGGCAGAGGCAGG--AGCAAUUCAAGUUGCCGUCACGGAAGUUGCCUGUUGAAAUUAAGCCAACAGCAAUUAUGGCAACAAAUGCGGCUAGCAGCGUCGAUUAUGCCUUCC------
-.((((((((.((.((--(....)))..((((((((......((((((.(((((.........)))))))))))))))))))...(((.....))))).)).....))))))..------ ( -36.00)
>consensus
_AGAGGCAGACGGAGG__AGCAAUUCAAGUUGCCGUCACGGAAGUUGCCUGUUGAAAUUAAGCCAACAGCAAUUAUGGCAACAAAUGCGGCUAGCAGCGUCGAUUAUGCCUCCC______
........((((................((((((((......(((((.((((((.........))))))))))))))))))).....((((.......))))......))))........ (-22.92 = -22.44 +  -0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:30:51 2006