| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,760,359 – 24,760,464 |
| Length | 105 |
| Max. P | 0.968744 |
| Location | 24,760,359 – 24,760,464 |
|---|---|
| Length | 105 |
| Sequences | 4 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 72.78 |
| Mean single sequence MFE | -36.40 |
| Consensus MFE | -19.67 |
| Energy contribution | -20.30 |
| Covariance contribution | 0.63 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.54 |
| SVM decision value | 1.63 |
| SVM RNA-class probability | 0.968744 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24760359 105 + 27905053 ---------CUGCAUGUCGUCCUGCUGCUCCUGCUGCUCGCUUCGUUGUGUAAAUUGUACGCCGCACGUUUUUACGCCUGCAGCGGC--UCAAGAACGGAGAAGCUGGAG-CAGGAG ---------..(((.(....).)))..((((((((.((.(((((((.(((((.....))))).)).(((((((..(((......)))--..)))))))..))))).))))-)))))) ( -41.10) >DroPse_CAF1 11316 100 + 1 CUCCUCCGU-------CUCCGCUACUCUU-CCUCUGCUCGCUUCGUUGUGUAAAUUGUACGCCGCACGUUUUUACGCCUGCAGCGGAGAUGGAGUCCAG---------ACCCAGGAC ...((((((-------(((((((......-.................(((((.....))))).((((((....)))..))))))))))))))))(((..---------.....))). ( -33.90) >DroEre_CAF1 11090 93 + 1 ------------CUGCUCCUCCUGCUCCUUCUGCUGCUCGCUUCGUUGUGUAAAUUGUACGCCGCACGUUUUUACGCCUGCAGCGGC--UGAAGAACGG---------AG-CAGGUG ------------........((((((((((((((((((.((...((.(((((.....))))).)).(((....)))...))))))))--...)))).))---------))-)))).. ( -36.30) >DroPer_CAF1 11158 97 + 1 CU---CCGU-------CCCCGCUGCUCUU-CCUCUGCUCGCUUCGUUGUGUAAAUUGUACGCCGCACGUUUUUACGCCUGCAGCGGAGAUGGAGUCCAG---------ACCCAGGAC ((---((((-------(.(((((((....-..............((.(((((.....))))).)).(((....)))...))))))).)))))))(((..---------.....))). ( -34.30) >consensus ________________CCCCCCUGCUCCU_CCGCUGCUCGCUUCGUUGUGUAAAUUGUACGCCGCACGUUUUUACGCCUGCAGCGGA__UGAAGAACAG_________AC_CAGGAC ........................((((...(((((((.((...((.(((((.....))))).)).(((....)))...)))))))))..))))....................... (-19.67 = -20.30 + 0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:30:50 2006