| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,759,848 – 24,759,952 |
| Length | 104 |
| Max. P | 0.648485 |
| Location | 24,759,848 – 24,759,952 |
|---|---|
| Length | 104 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 96.83 |
| Mean single sequence MFE | -27.40 |
| Consensus MFE | -25.20 |
| Energy contribution | -25.20 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.92 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.648485 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24759848 104 - 27905053 A-GGGGCAAAAGUGCGGCGAACAUGAGCUGGCAAAAGCCCGAGUUUAGAGUUGGAAAUAACGAAAGACCAGGCCAAGAAAAACUUUUGCCCAAAGAUGGGGUACA .-.((((((((((.((((........))))......(((.(.((((...((((....))))...))))).)))........)))))))))).............. ( -30.40) >DroEre_CAF1 10568 105 - 1 AUGGGGGAAAAGUGCGGCGAACAUGAGCUGGCAAAAGCCCGAGUUUAGAGUUGGAAAUAACGAAAGACCAGGCCAAGAAAAACUUUUGCCCAUAGAUGGGGUACA ...(((.((((((.((((........))))......(((.(.((((...((((....))))...))))).)))........)))))).))).............. ( -25.90) >DroYak_CAF1 10792 105 - 1 AUGGGGGAAAAGUGCGGCGAACAUGAGCUGGCAAAAGCCCGAGUUUAGAGUUGGAAAUAACGAAAGACCAGGCCAAGAAAAACUUUUGCCCAAAGCUGGCGUACA ...(((.((((((.((((........))))......(((.(.((((...((((....))))...))))).)))........)))))).))).............. ( -25.90) >consensus AUGGGGGAAAAGUGCGGCGAACAUGAGCUGGCAAAAGCCCGAGUUUAGAGUUGGAAAUAACGAAAGACCAGGCCAAGAAAAACUUUUGCCCAAAGAUGGGGUACA ...(((.((((((.((((........))))......(((.(.((((...((((....))))...))))).)))........)))))).))).............. (-25.20 = -25.20 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:30:49 2006