Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,116,827 – 3,116,917 |
Length | 90 |
Max. P | 0.991544 |
Location | 3,116,827 – 3,116,917 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 95.91 |
Mean single sequence MFE | -19.88 |
Consensus MFE | -18.52 |
Energy contribution | -18.20 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.11 |
Mean z-score | -1.75 |
Structure conservation index | 0.93 |
SVM decision value | 2.27 |
SVM RNA-class probability | 0.991544 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3116827 90 - 27905053 UUUUCUCACAUUUUUUCGCGGCUACCCAUGCACUUGCAUUGACACUCAAGCCGUGGCUGAAAGCCAGGCCAAAA-CCCCUGAACCAACAGC ................(((((((....((((....))))((.....)))))))))((((.....((((......-..))))......)))) ( -21.30) >DroSec_CAF1 4546 90 - 1 UUUUCUCACAUUUUUUCGCGGCUCCCCAUGCACUUGCAUUGACACUCAAGCCGUGGCUGAAAGCCAAGCCAAAA-CCCCUGAACCAACAGC ..............(((((((((....((((....))))((.....))))))))((((........))))....-.....)))........ ( -18.20) >DroSim_CAF1 9878 90 - 1 UUUUCUCACAUUUUUUCGCGGCUCCCCAUGCACUUGCAUUGACACUCAAGCCGUGGCUGAAAGCCAGGCCAAAA-CCCCUGAACCAACAGC ................(((((((....((((....))))((.....)))))))))((((.....((((......-..))))......)))) ( -20.70) >DroEre_CAF1 4367 88 - 1 UUUUCUCACAUUUUUUCGCGGCU---CAUGCACUUGCAUUGACACUCAAGCCGUGGCCAAAAGCCAGGCCAAAAGCCCCCGAACCAACAGC ..............((((.((((---(((((....))).))).......(((.((((.....))))))).....)))..))))........ ( -20.70) >DroYak_CAF1 8057 90 - 1 UUUUCUCACAUUUUUUCGCGGCUCCCCAUGCACUUGCAUUGACACUCAAGCCGUGGCUAAAAGCCAGGCCAAAA-CCCCUGAACCAACAGC ..........(((..((((((((....((((....))))((.....))))))))))..)))...((((......-..)))).......... ( -18.50) >consensus UUUUCUCACAUUUUUUCGCGGCUCCCCAUGCACUUGCAUUGACACUCAAGCCGUGGCUGAAAGCCAGGCCAAAA_CCCCUGAACCAACAGC ..............(((((((((....((((....))))((.....))))))))((((........))))..........)))........ (-18.52 = -18.20 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:36 2006